Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | AFITCVNDDTLYDECLRYINNLEIPEGYEIDIISVREAESITSAYNNAMNSTDAKYKVYLHQDTLIVNKDFIKNIIDIFNLDEKIGMIGMVGAKNIPTNAYWWDDDEKYGKVYDSHIGSIQRLYFNEIDGRYEQVKAIDGFIMITQYDVKWRDDLFDGWHFYDISQSVEFNNKGYKVVIPNQEKFWCVHDCGLINASDIYIEKYRKIFIEEY |
1 | 2nxvA | 0.14 | 0.13 | 4.36 | 1.61 | SPARKS-K | | SVCSLVRDQAKYDRLLESFERFGFTPD-KAEFLAADNRFHGFSWHKQMLPRCKGRYVIFCHEDVEL-VDRGYDDLVAAIEALPKWLVAGV---AGSPWRPLNHSVTAQALHISDVFGNDRRRGNVP------CRVESLDECFLLMRRLVLNSYD-MQGFHYYGADLCLQAEFLGGRAYAID---FHLHHYGRAIADE--NFHRLRQEMAQKY |
2 | 2nxvA | 0.14 | 0.13 | 4.36 | 2.11 | FFAS-3D | | -VCSLVRDQAKYDRLLESFERFGFTPKAEFLAADNGNQFHGFSWHKQMLPRCKGRYVIFCHEDVEL-VDRGYDDLVAAIEADPKWLVAGVAGSPWRPLN----HSVTAQALHISDVFGNDRRR-----GNVPCRVESLDECFLLMRRLKPVLNSYDMQGFYYGADLCLQAEFLGGRAYAID---FHLHHYGRAIAD--ENFHRLRQEMAQKY |
3 | 2nxvA | 0.16 | 0.14 | 4.73 | 2.91 | HHpred | | SVCSLVRDQAKYDRLLESFERFGF-TPDKAEFLAADNRFHGFSWHKQMLPRCKGRYVIFCHEDVELVDRGYDDAIEALEEADPKWLVAGVAGSP-------WRPLNHSALHISDV-FGNDR-----RRGNVPCRVESLDECFLLMRRLVLNSYD-MQGFHYYGADLCLQAEFLGGRAYAIDF---HLHHYGRAIAD-ENF-HRLRQEMAQKY |
4 | 2nxvA | 0.15 | 0.14 | 4.61 | 1.66 | MUSTER | | SVCSLVRDQAKYDRLLESFERFGFTPD-KAEFLAADNQFHGFSWHKQMLPRCKGRYVIFCHEDVELV-DRGYDDLVAAIEALPKWLVAGVAGSPWRPLNHSVTAQ----ALHISDVFGNDRRRGNVP-----CRVESLDECFLLMRRLKLNSYD-MQGFHYYGADLCLQAEFLGGRAYAID---FHLHHYGRAIAD--ENFHRLRQEMAQKY |
5 | 2nxvA | 0.15 | 0.13 | 4.48 | 1.85 | CNFpred | | SVCSLVRDQAKYDRLLESFERFGFTP-DKAEFLAADNREHGFSWHKQMLPRCKGRYVIFCHEDVELVD-RGYDDLVAAIEALPKWLVAGVAGSPWR------PLNHSVTAQALHISDVFGNDRRRG-----PCRVESLDECFLLMRRPVLNSYDM-QGFHYYGADLCLQAEFLGGRAYAID---FHLHHYGRAI--ADENFHRLRQEMAQKY |
6 | 2ffuA | 0.11 | 0.10 | 3.76 | 1.23 | HHsearch-2 | | SVVITHNERSALLRTVVSVLKKSPPH-LIKEIILVDDYEGLMRSRVRGADAAQAKVLTFLDSHCEC-NEHWLEPLLERVAEDR-TRVVS---PIIDVMDNFQYVGASLKGGDWNLVFKWDYMTPRQGNPVAPIKTPMIAGGLFVMDKFYKYDMMMD-VWGGENLEISFRVWQCGGSLEIIPCS--RVGHVFRKQHGSGTVFARNTRRAAEVW |
7 | 2nxvA | 0.13 | 0.12 | 4.24 | 1.91 | Neff-PPAS | | SVCSLVRDQAKYDRLLESFERFGFTPD-KAEFLAADNQFHGFSWHKQMLPRCKGRYVIFCHEDVELV-DRGYDDLVAAIEALPKWLVAGVAGSPWRPLN------HSVTAQALHISDVFGNDRRRGNVP---CRVESLDECFLLMRRLKPVLSYDMQGFHYYGADLCLQAEFLGGRAYAID---FHLHHYGRAIAD--ENFHRLRQEMAQKY |
8 | 2z86C1 | 0.10 | 0.09 | 3.30 | 1.81 | HHsearch | | SIVIPYNRAKILAITLACLCNQKIY---DYEVIVADDGYGLCAVRNLGLRAAKYNYVAILDCDMAP-NPLWVQSYMELLAVDDNVALIG---PRKYIDTSKHTYLDFLQKSLINEIPEISVDWHTDNLRLCNTPFRFFSGGNVAFAKKWWFDEEFT-HWGGEDNEFGYRLYREGCYFRSVEGA--MAYHQEPPGKE---------------- |
9 | 2nxvA | 0.14 | 0.13 | 4.49 | 1.80 | PROSPECTOR2 | | SVCSLVRDQAKYDRLLESFERFGFTPD-KAEFLAADNRFHGFSWHKQMLPRCKGRYVIFCHEDVEL-VDRGYDDLVAAIEADPKWLVAGVAGSPWRPLNHSVTAQALHI---------SDVFGNDRRRGNVPCRVESLDECFLLMRRLVLNSYD-MQGFHYYGADLCLQAEFLGGRAYAIDFH---LHHYGRAIAD--ENFHRLRQEMAQKY |
10 | 2ffuA1 | 0.11 | 0.10 | 3.75 | 2.20 | SAM | | SVVITHNEARALLRTVVSVLKKSPP---HLEIILVDDYEGLMRSRVRGADAAQAKVLTFLDSHCEC-NEHWLEPLLERVA-EDRTRVVS---PIIDVINMDNFQYVGASADLKGGFDWPEQRRSRQGNPVAPIKTPMIAGGLFVMDKFYKYDMMMD--VGGENLEISFRVWQCGGSLEIIPCS--RVGHVFRKQHGSGTVFARNTRRAAEVW |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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