>PF13595 (253 residues) VQVTFAKTVHIIFPSAVKYVDLGSNYIIAGKADGAENVVRVKATTEGFPGETNFSVICED GSFYSFNAKYAHEPEMLNIEMKDFLENEDTTDFSHTRMNIYFRELGNESPLLVKLIMQSI YKNNDREIKHLGCKRFGVQFLVKGIYSHNGLFYFHTQVRNSSNVPFDTDFIRFKIVDKKV AKRTAIQETVIDPVRSYNEILVIDGKSTVRTVYTVPQFTIPDDKVLVIELMEKNGGRHQT IRVENSDVVAAKV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | VQVTFAKTVHIIFPSAVKYVDLGSNYIIAGKADGAENVVRVKATTEGFPGETNFSVICEDGSFYSFNAKYAHEPEMLNIEMKDFLENEDTTDFSHTRMNIYFRELGNESPLLVKLIMQSIYKNNDREIKHLGCKRFGVQFLVKGIYSHNGLFYFHTQVRNSSNVPFDTDFIRFKIVDKKVAKRTAIQETVIDPVRSYNEILVIDGKSTVRTVYTVPQFTIPDDKVLVIELMEKNGGRHQTIRVENSDVVAAKV | |||||||||||||||||||
1 | 1xksA | 0.11 | 0.09 | 3.39 | 1.25 | CNFpred | LTAVQGGSFILSSSSQLIRLIPESGKIHQHILP-DLTLSSVLWDR----ERSSFYSLTS-SNISKWELDD--SSEKHAYSWDI-------------------------NRALKENITDAIWGS-ESNYEAIK---EGVNIRYLDLKQNCDGLVILAAAWHSADNPCLIYYSLITIEDNGCQMSDAVTVEVTQYNPPF-LCQLTVPNFSNQTAYLYNE-----SAVYVCSTGTG-SLPQEKIVFNADSVLGAGA | |||||||||||||
2 | 2ypwA | 0.14 | 0.04 | 1.49 | 1.44 | HHsearch-2 | IDAVAGVATHIVVAETYITHAFGDSERTFA---HKMNHFFVKPKQA--MSDTNLVIVT-DKRTYNIVLHFIGEETKTVSKSF-------------------IET----------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 2ypwA | 0.14 | 0.04 | 1.49 | 1.82 | HHsearch | IDAVAGVATHIVVAETYITHAFGDSERTFA---HKMNHFFVKPKQA--MSDTNLVIVT-DKRTYNIVLHFIGEETKTVSKSFIET------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | |||||||||||||
4 | 4es8A | 0.14 | 0.12 | 4.03 | 0.90 | SPARKS-K | REHNEVKDS---------YIKIDKQSIAARYKTTAPYSVAFKVNTKSLIKDHDYKITFESGITVDYRIGSANKTTDDSFKI---------SDESKYASNVKIEG-------------------EEQGFKQREQGDKTISFRTL-----KEGLVLLSKVEKKPQGDLDVEFKNLKIIDVTNYVGNKNVQLTLKSISLFNSTVTVTKDQQNPISITLSAKSLKNKEKLKVSIKQKQSKKTFFFEVGIDPKVEAK- | |||||||||||||
5 | 4r4gA1 | 0.13 | 0.06 | 2.05 | 0.75 | FFAS-3D | --------------------------------------------------------------------------------------------------------------------------------SETEKSSDIAQVKIKDVSYTLPVLKVNVAVKNTGKDPLNVDDFTLYQGDTKSDTDPEDYSEKL-------QGSTINADKSVEGNLF---FVVDKGKQYELNYTPESYGKSVTFKIDKKILATAD- | |||||||||||||
6 | 4r4gA1 | 0.13 | 0.06 | 2.04 | 0.33 | HHpred | --------------------------------------------------------------------------------------------------------------------------------SETEKSSDIAQVKIKDVSYTLLVLKVNVAVKNTGKDPLNVD-SDFTLYQGD-TK-SD-TD-----PEDYKQGSTINADKSVEGNLFFV---VDKGKQYELNYTPESGDKSVTFKIDGKKILATA- | |||||||||||||
7 | 4es8A | 0.11 | 0.11 | 3.96 | 0.80 | MUSTER | WEVSADGSSGRFFATDSYVFHLIPAKDVKKREHNEVKDSYIKID----KQSIAARYKTSTTAPYSVAFKVNIKDHDYKITFEQGQIASGITVDYRIGSAFNKTTDDSFKISDESKYASNVIEGEEQGFKQREQGDKTISFRTLKEGPM--SLVLLSKVEKKPQGDLDVEFKNLKIIDVTNVGNKNVQLTLKDEISLFNSTVTVTKDQQNPISITLSE-SLKNKEKLKVSIKQKQSKKDFFFEVGIDPKVEAK- | |||||||||||||
8 | 5a6dA | 0.06 | 0.05 | 2.07 | 1.04 | CNFpred | FKITE-EGVSMRAMVVLIDLNLPFSKYEVEE----PETIGINMD-KRGKSKDTLILRKGDENFLEITFEGT---AKRTFRLPLIDVEELELELPELPFTAKVVL----LGEVLKEAIKDASLV----------------SDSLKFIAKEDEFTMKAEGEVEIKLTLEEGLLDLEVEE--------ETRSAYGISYLADMVKGIGKADEVTLRFGT-------EMPLQMDYFIR-DEGKLTFLLA--------- | |||||||||||||
9 | 4r4gA1 | 0.14 | 0.06 | 2.16 | 0.59 | HHsearch-2 | -------------------------------------------------------------------------------------------------------------------------------ESETEKSSDIAQVKIKDVSYTLLVLKVNVAVKNTGKDPLNVD-SDFTLYQGD-TK-SD-TD-----PEDYKQGSTINADKSVEGNLFFV---VDKGKQYELNYTPESGDKSVTFKIDGKKILAADK | |||||||||||||
10 | 4es8A | 0.11 | 0.10 | 3.69 | 0.86 | Neff-PPAS | --ATDSYVFHLIPAKDVKGWREHNEVKDSYIKIDKQSIAARYKTSTTAPYSVAFKVNTKKDHDYKITFEQGQIASGITVDYRIGSAFNKT----------------TDDSFKISDESKYASNVKIEGEEQGFKQREQGDKTISFRTLKEGSLVLLSKVEKKPQGDLDVEFKNLKIIDVTN----PSQLDKGVAYVGNKNVQLTLKSDDGRTNFEGDEISLSRGELLQTVTVTKDQQNPISITLSEDQAKSLKN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |