>PF13593 (310 residues) DNFTLTLIAVVATATLLPAQGQVAVAFSWITNIAISLLFFLHGAKLSRNAVIAGAGHWRL HLLIFICTFGLFPLLGLALKPLLVPMLGSELYAGFLYLCVLPATVQSAIAFTSLARGNIP AAICSAAASSLVGIFITPVLVALLMGVHSDGGSTIEAIRKISIQLLLPFIAGQIARHWIG DWVNRNKSWLKNVDQGSILLVVYTAFSSAVIGGLWQQVPALKLLGVLFGCSLLLALALLV THLLGKWLGFNLEDRITILFCGSKKSLATGVPMAQVLFAGSSIGVLILPLMLFHQVQLMV CAVLAQRFAK |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DNFTLTLIAVVATATLLPAQGQVAVAFSWITNIAISLLFFLHGAKLSRNAVIAGAGHWRLHLLIFICTFGLFPLLGLALKPLLVPMLGSELYAGFLYLCVLPATVQSAIAFTSLARGNIPAAICSAAASSLVGIFITPVLVALLMGVHSDGGSTIEAIRKISIQLLLPFIAGQIARHWIGDWVNRNKSWLKNVDQGSILLVVYTAFSSAVIGGLWQQVPALKLLGVLFGCSLLLALALLVTHLLGKWLGFNLEDRITILFCGSKKSLATGVPMAQVLFAGSSIGVLILPLMLFHQVQLMVCAVLAQRFAK | |||||||||||||||||||
1 | 4n7wA | 0.19 | 0.18 | 5.82 | 3.28 | SPARKS-K | RLFPVWALLLSVAAYFRP---TTFTGIGPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLF--RMPPDLSAGMVLVGSVASGTASN-VMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVD--ATISVDVVGMLKSILQIVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQ------SHIASVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSP----LAALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
2 | 3zuxA | 0.20 | 0.19 | 6.09 | 3.53 | FFAS-3D | KTFSLWAALFAAAAFFAPDTFKW---AGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSKLL--NLPAEIAVGVILVGCCPGGTASNV-MTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGE-MLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGK------IMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQNSGLAAALAAAHFAAAP--VVAVPGALFSVWHNISGSLLATYWAA | |||||||||||||
3 | 4n7wA | 0.18 | 0.17 | 5.65 | 4.22 | HHpred | RLFPVWALLLSVAAYFRPTTFTGI---GPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGTASN-VMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATI--SVDVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQ-SHIASV--G---FVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPL----AALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
4 | 4n7wA | 0.18 | 0.17 | 5.65 | 2.39 | MUSTER | RLFPVWALLLSVAAYFRPTTFTG---IGPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGT-ASNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATI-SVDVVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEP----YLPAMSMVCILAIISAVVAGSQSHI--ASVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFS----PLAALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
5 | 4n7wA | 0.18 | 0.17 | 5.65 | 1.93 | CNFpred | RLFPVWALLLSVAAYFRPTTFTGIG---PYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGT-ASNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDA--TISVDVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSH------IASVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFS----PLAALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
6 | 4n7wA | 0.18 | 0.17 | 5.65 | 4.59 | HHsearch-2 | RLFPVWALLLSVAAYFRPTTFTGIG---PYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGTASN-VMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATI--SVDVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGS-QSHIASV--G---FVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSPL----AALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
7 | 4n7wA | 0.18 | 0.17 | 5.65 | 3.26 | Neff-PPAS | RLFPVWALLLSVAAYFRPTTF---TGIGPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGTA-SNVMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATIS-VDVVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSH------IASVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFS----PLAALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
8 | 4n7wA | 0.19 | 0.17 | 5.64 | 6.79 | HHsearch | RLFPVWALLLSVAAYFRPTTFTGIG---PYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGTASN-VMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATI--SVDVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQ-SHIASV--G---FVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSP----LAALPGALFSVWHNLSGSLLAGYWS- | |||||||||||||
9 | 4n7wA | 0.18 | 0.17 | 5.65 | 2.56 | PROSPECTOR2 | RLFPVWALLLSVAAYFRPTTFTGI---GPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGTASN-VMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATISVDV-VGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGSQSHIA------SVGFVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSP----LAALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
10 | 4n7wA | 0.19 | 0.17 | 5.64 | 2.86 | SAM | -LFPVWALLLSVAAYFRPTTFTGI---GPYVGPLLMLIMFAMGVTLRLDDFKRVLSRPAPVAAATFLHYLIMPLTAWILAMLFR--MPPDLSAGMVLVGSVASGTASN-VMIYLAKGDVALSVTISAVSTLVGVFATPLLTRLYVDATI--SVDVGMLKSILQIVVIPITAGLVIHHTFTKTVKRIEPYLPAMSMVCILAIISAVVAGS-QSHIASV--G---FVVIIAVILHNGIGLLSGYWGGKLFGFDESTCRTLAIEVGMQNSGLAATLGKIYFSP----LAALPGALFSVWHNLSGSLLAGYWSG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |