Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | FAQTTSTSSSPVAFGIKAGMNVSSLSKDEGLDDQKSKIGFNGGVFANIPVASSFSVQPELLYSQYGSKAEYTVLGDKYSSSTNLDYLTVPVMFQYNALPNLYLEAGPEFGFMLSAKNKVKNESTGNSSTTDDFKDDLNTFNFGIGLGAGYYFTPNIGLTARYVAGLTDIA |
1 | 3efmA | 0.08 | 0.07 | 2.83 | 1.09 | SPARKS-K | | YGVVSADLTPDTVLTTSVEYQHNHSNGP---WARQDTEATTYFVDLTHRFTNDWKLRAAYSHTDGRYLMKHVF--SNYDGNLDRDDIHFSLSAPFEAFGLHEVALGWMSIDNHSDIQRYAMTLSP--------ADDVRTKQTGAYLVGRFALAEPLHLIVGDRWSDWKTK |
2 | 2f1tA | 0.08 | 0.07 | 2.74 | 1.19 | FFAS-3D | | -------EAGEFFMRAGSATVRPT-----EGGGFSVTNNTQLGLTFTYMATDNIGVELLAATP-----FRHKIGTRATGDIATVHHLPPTLMAQWYFGDASYVGAGINYTTFFDNGFNDHGKEAGLSDLSLK-----DSWGAAGQVGVDYLINRDWLVNMSVWY------ |
3 | 2r4nA | 0.15 | 0.15 | 4.95 | 0.50 | HHpred | | -ALITMFDRPTFSAGAVYIDPDVNISGTSLKADNIAPTAWVPNMHFVAPINDQFGWGASI-TSNYGLATEFNDTGGSVGGTTDLETMNLNLSGAYRLNNAWSFGLGFNAVYARAKIERFAGDLGAIDSNTKTAHLNGNQWGFGWNAGILYELDKNNRYALTYRSEVKI-- |
4 | 3qraA | 0.15 | 0.12 | 4.15 | 1.46 | MUSTER | | --------MEG-ESSISIGYAQSRVKEDGYKLDKN---PRGFNLKYRYEFNNDWGVIGSFAQTRRG-------FEESVLIDGDFKYYSVTAGPVFRINEYVSLYGLLGAGHGK---AKFSSFGQSESRS---------KTSLAYGAGLQFNPHPNFVIDASYEY-LDDVK |
5 | 3efmA | 0.09 | 0.08 | 2.92 | 1.39 | CNFpred | | ------------KLRAAYSHTDGRYLMKHFSNYDGNLDRDDIHFSLSAPFELRHEVALGWMSIDNHSDIQRYAM-LSPADDVRTKQTGAYLVGRFALAEPLHLIVGDRWSD-WKTKQMYFG------SRREYR----IKNQFTPYAGLTYDINDTYTAYASYTEIFQPQN |
6 | 2x27X | 0.07 | 0.07 | 2.85 | 1.46 | HHsearch-2 | | --DIQGHKAGDFIIRGGFATVDPDDSSSDIGTKATVDSDTQLGLTFTYMFADKWGVELVAATPFHQVDVK-GL---LDGKLADIKQLPPTLLLQYYPMSAFQPYGGLGVNYTTFFDEDLASNRKA---QGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDAS |
7 | 2x27X | 0.09 | 0.09 | 3.34 | 1.95 | Neff-PPAS | | --DIQGHKAGDFIIRGGFATVDPDDSSSDIKLDGTVDSDTQLGLTFTYMFADKWGVELVAAT---PFNHQVDVKGLLDGKLADIKQLPPTLLLQYYPMSAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQ---DSWGLAGELGFDYMLNEHALFNMAVWYMDIDTK |
8 | 2x27X | 0.07 | 0.07 | 2.85 | 1.54 | HHsearch | | --DIQGHKAGDFIIRGGFATVDPDDSSSDIGTKATVDSDTQLGLTFTYMFADKWGVELVAATPFHQVDVK-GL---LDGKLADIKQLPPTLLLQYYPMSAFQPYGGLGVNYTTFFDEDLASNRKA---QGFSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWYMDIDT- |
9 | 2x27X | 0.10 | 0.10 | 3.65 | 0.96 | PROSPECTOR2 | | DIQ--GHKAGDFIIRGGFATVDPDDSSSDIKLDGAKQRDTQLGLTFTYMFADKWGVELVAAT---PFNHQVDVKGLLDGKLADIKQLPPTLLLQYGTNSAFQPYGGLGVNYTTFFDEDLASNRKAQGFSSMKLQ---DSWGLAGELGFDYMLNEHALFNMAVWYMDIDTA |
10 | 2x27X | 0.09 | 0.08 | 2.92 | 0.51 | SAM | | ---IQGHKAGDFIIRGGFATVDPDDSSSD--IKATVDSDTQLGLTFTYMFADKWGVELVAATPFNQVDVK-GLL---DGKLADIKQLPPTLLLQYYPMSQPYGGLGVNYTTFFDEDLASNR---------FSSMKLQDSWGLAGELGFDYMLNEHALFNMAVWY------ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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