Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | YILFDGPVRKALLPFTFTRPVADLRIGILTIREKWEKYLGYTTTTITEDYLSEKYPMVEMEENILINASFLPNEVLVEMIKSLEKNQAIFKGEEVVAFYTNDTQEEVDFDTYEIIDYNEEGLRIEHTWDIFSKNDAAIREDFELLTEGRT |
1 | 4o6mA1 | 0.17 | 0.13 | 4.38 | 0.90 | SPARKS-K | | LAYVKNHEYGELL-------------G-LTLRERIEKTLQAGFDVRFFD----ELSLEEAEDYLIILEPVLILERDL----LLEGRKILVSDGFTVGYFFGGDVFDGNLQSNNLESYEIWAIKLSNL----KTAEKLLLSSLI------- |
2 | 5vogA | 0.13 | 0.12 | 4.17 | 0.54 | FFAS-3D | | -IWYTYDDIHRV-IKALAEKIRNIGGGGFIPARMLRCFLEIPIYAVTTAYWLDPVPEVLRGKNVLVVDEVDDSEFCLKELLKEDFDTVGVA---VLHEKIKAKAGKIPEGIPYFSGITVEDWWINYPWDALDIDEHN-----RLAEAGR- |
3 | 2ggoA | 0.17 | 0.17 | 5.45 | 0.35 | HHpred | | AFILAAGSGERLEPITHTRPKAFVPILSKPLIEYQIEYLGRITVIVSSKNKEYKKQDDFNDEALIIYGDLFFSNEEICNIITLKPYGVLVDQNNLSKIIENSDIFTYKLDKDHRVKEEGYWMDIGKPWNIIDVNKWALDNLVF------- |
4 | 5zkpA | 0.13 | 0.11 | 3.95 | 0.62 | MUSTER | | LIVYGSTTG--------------NTEYTAETIARELADAGYEVDSRDAA-SVEAGGLFEGFDLVLLGCSTWLQDDFIPLFDSLEETGA--QGRKVACFGCGDDAIEEKLKNLGAEIVQDGLRIDGDPRAARDDIVGWAHDVRGAIAEVKR |
5 | 1moqA | 0.07 | 0.06 | 2.43 | 0.76 | CNFpred | | -----------------------SYNSGMVSRYWFESLAGIPCDVEIASEFRYRKSAVRRNSLMITLSQSGETADTLAGLRLSK----ELGYLGSLAICNVPGSSLVRES-DLALMTNATEIGVASTKAFTTQLTVLLMLVAKLSRLKGL |
6 | 1vt4I | 0.08 | 0.07 | 2.89 | 0.70 | HHsearch-2 | | LSVFEDAFVDNFMPKSILDHSSNIKLRIHSIQAELRRLLKPNLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSA--ATTTH-ISLDHMT-----LTPDEVKSLL------LKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA |
7 | 1yykA1 | 0.16 | 0.13 | 4.43 | 0.76 | Neff-PPAS | | ---------KSLLEKALTHVSYSKKEH----YETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKR------------GKINETIWAAVYIDSGRDANFTRELFYKLFKEDILSAIKEGRVK- |
8 | 5b04E1 | 0.13 | 0.12 | 4.18 | 0.64 | HHsearch | | VVFA--GFGNSLYPLTDALPKALLPIGNKPMLHYPLYWLGTSAILICMEELRSGYILDIKNDFVCLSCDSIVGLPPYTVLDKFRNPSIGIETSRLLYAKSSSDPNTNSFWEQVALIAGIICSRANNLPNYFELNKCIAKLTPE------- |
9 | 1aylA | 0.14 | 0.09 | 2.96 | 0.70 | SP3 | | ---------------------------------------MRVNNGLTPQELEAY--GISDVHDIVYN---PSYDLLYQEELDTGYERGVLTNLGAVAVDTGDDTTRDTFWWADKGKGKNDNKPLS-------------PETWQHLKGGKR |
10 | 1s3gA | 0.05 | 0.05 | 2.42 | 0.60 | PROSPECTOR2 | | MNIVE---KYGTPHISTGDMFRAAIQEGTELGVKAKSFMALVPDEVTIGIVRERLSKSDCDNGFLLDGFPRTVPQADQLLADMGRKIEHVCGTSYHLLFNPPQVEGKCDKDGGELYQRADDNTVTNRLEVNMNQTAPLLAFYDILQGNGQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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