Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | WGLRRMVLHYAHLCAAAGGVDAFLIGSEMRGLTTIRSGASTYPAVQAYRDLLADVRSILGSGTRIGYAADWSEYFGHQPSDGSGDVFFHLDPLWADPAIDFIGIDNYMPLSDWRDGFDHADAQEGWPAIYDRAYLQGNISGGEGFEWFYASAADRTAQVRTPITDGTAGKPWVFRNKDLRAWWSNPHYDRPGGVESGAPTAWVPQSKPIWFTELGCPAIDRGTNQPNVFFDPKSSESFTPHFSRGWRDDAIQRAYLEATYLFWSTQANNPVSSVYGGRMVHVSECAAWTWDARPYPYFP |
1 | 3civA | 0.24 | 0.13 | 4.07 | 1.09 | SPARKS-K | | GSYSDMMAHYAHVAKRTG-CEMFCVGCEMTTAEPHE---------AMWRETIARVRTEY--DGLVTYNCNHGREEH--------------VRFW--DAVDLISSSAYYP--------------------IRVPVLREVAEAHE---------------------------------------------------------------KPLFFMEVGCPSRSGSGACPWD------------YRHPGAVCLDEQARFYEAMFAAMPDEP-------------WFKGYMLWEWPWKLYPREA |
2 | 5ylhA | 0.23 | 0.12 | 3.89 | 1.31 | FFAS-3D | | -SYINYQKHYAKIAEKT-NCEMFVVGCEMVQAERR---------EDKWRELIAEVRKDYRG--LVTYNTDKYQEDNVK----------------FWDALDVISSSGYYPINDWDR---------------QLDRIEAVVKQ---------------------------------------------------------------YDKPFFFVEAGCPSRSGSALLPNK------------WDLEGAINLQEQADYYQVMFEKTASRS-------------WVGGFGLWDWQTYLYD--- |
3 | 5ylhA | 0.24 | 0.13 | 4.17 | 3.32 | HHpred | | ESYINYQKHYAKIAEK-TNCEMFVVGCEMVQAE---------RREDKWRELIAEVRKDY--RGLVTYNTDKYQE--DN-------V-----KFW--DALDVISSSGYYPINDW--------------------------------------------------------DRQ---LDRIEAVV-------------------KQYDKPFFFVEAGCPSRSGSALLPNKWDL------------EGAINLQEQADYYQVMFEKTAS-----------RSWVG--GFGLWDWQTYLYDEKD |
4 | 3civA | 0.25 | 0.14 | 4.26 | 1.00 | MUSTER | | GSYSDMMAHYAHVAKRT-GCEMFCVGCEMTTAE---------PHEAMWRETIARVRTEY--DGLVTYNCNHGREEH--------------VRFW--DAVDLISSSAYYPI------------------------------------------DRWRD-----------------RVPVLREVAEAHE-------------------KPLFFMEVGCPSRSGSGACPWDYRH------------PGAVCLDEQARFYEAMFAAMPDEP-------------WFKGYMLWEWPWKLYPR-E |
5 | 3civA | 0.24 | 0.13 | 4.17 | 1.44 | CNFpred | | GSYSDMMAHYAHVAKRT-GCEMFCVGCEMTTAEP---------HEAMWRETIARVRTEY--DGLVTYNCNHGREEH--------------VRFWD--AVDLISSSAYYPID------------------RWRDRVP-----------------------------------------VLREVAEA-------------------HEKPLFFMEVGCPSRSGSGACPWDYRH------------PGAVCLDEQARFYEAMFAAMPDE--------------WFKGYMLWEWPWKLYPREA |
6 | 3civA | 0.24 | 0.14 | 4.26 | 1.47 | HHsearch-2 | | GSYSDMMAHYAHVAKRT-GCEMFCVGCEMTTAEP-H--------EAMWRETIARVRTEY--DGLVTYNCNHGRE-E-H-------V-----RFW--DAVDLISSSAYYPIDRW-------------------RDRVPV----------------------------------------L------------REVAE-------AHEKPLFFMEVGCPSRSGSGACPWDYRH------------PGAVCLDEQARFYEAMFAAMPDE-----------PW--FKGYMLWEWPWKLYPREA |
7 | 3civA | 0.24 | 0.13 | 4.17 | 0.97 | Neff-PPAS | | GSYSDMMAHYAHVAKRTG-CEMFCVGCEMTTAEPH---------EAMWRETIARVRTEYDG--LVTYNCNHGREEHVR----------------FWDAVDLISSSAYYPI-----------------------------------------------------------DRWRDRVPVLREVAEAHE-------------------KPLFFMEVGCPSRSGSGACPWDYRH------------PGAVCLDEQARFYEAMFAAMPDEP-------------WFKGYMLWEWPWKLYPREA |
8 | 3civA | 0.25 | 0.14 | 4.26 | 2.38 | HHsearch | | GSYSDMMAHYAHVAKRT-GCEMFCVGCEMTTAEP-H--------EAMWRETIARVRTEY--DGLVTYNCNHGRE-EH--------V-----RFW--DAVDLISSSAYYPIDRW-------------------RDRVPV----------------------------------------------------LREVAE-------AHEKPLFFMEVGCPSRSGSGACPWDYRH------------PGAVCLDEQARFYEAMFAAMPDE-----------PW--FKGYMLWEWPWKLYPRE- |
9 | 3civA | 0.26 | 0.14 | 4.44 | 1.24 | PROSPECTOR2 | | WSYSDMMAHYAHVAKR-TGCEMFCVGCEMTTAEPH---------EAMWRETIARVRTE--YDGLVTYNCNHGREEHV--------------RFW--DAVDLISSSAYYPIDRWRD---------------RVPVLREVAEA---------------------------------------------------------------HEKPLFFMEVGCPSRSGSGACPWDYRHP------------GAVCLDEQARFYEAMFAAMPDEPW-------------FKGYMLWEWPWKLYPSYR |
10 | 3civA | 0.25 | 0.13 | 3.95 | 1.48 | SAM | | -SYSDMMAHYAHVAKRT-GCEMFCVGCEMTTAE-PHE--------AMWRETIARVRTEY--DGLVTYNCNHGRE-H---------V-----RFW--DAVDLISSSAYYPIDRW-------------------------------------------------------------------------RVPVLREVAEA-------HEKPLFFMEVGCPSRSGSGACPWDYRH-------------GAVCLDEQARFYEAMFAAMPDE-----------PW--FKGYMLWEWP-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|