>PF13502 (244 residues) FGRIDSDITISGNTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAE FFGVTTPIRQSSFNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRL LSVDALMRKLRFDFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNL VRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPL DDPQ |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | FGRIDSDITISGNTLTLTNGLIDTGFSRLTADGEWVNNPGNERTSLKGKLRGQKIDAAAEFFGVTTPIRQSSFNVDYDLHWRKAPWQPDEATLNGIIHTQLGKGEITEINTGHAGQLLRLLSVDALMRKLRFDFRDTFGEGFYFDSIRSTAWIKDGVMHTDDTLVDGLEADIAMKGSVNLVRRDLNMEAVVAPEISATVGVAAAFAVNPIVGAAVFAASKVLGPLWSKVSILRYHISGPLDDPQ | |||||||||||||||||||
1 | 6beaA3 | 0.06 | 0.04 | 1.75 | 0.78 | SPARKS-K | DGDATDNITLADS---------NIINGGIETIVTAG--NKTGIHTVNLNIKD----------GSVIGAANNKQTIYASASAQGA------GSATQNLNLSVADST-------------------------------------IYSDVLALSESENSASTTTNVNMNVARSYWEGNAYTFNSGDKAGSDLDINLSDSSVWKGKVSGAGDASVSLQNGSVWNVT---------------------- | |||||||||||||
2 | 5vtgA | 0.18 | 0.09 | 2.95 | 0.69 | FFAS-3D | ------------NLFTLD--------GRVDVPWARIVVHDPINSNLIVHVGN-----------------------NVRIDAFG-----LKARLTGDLNVVQDKQGLG---------------------------------------LNGQINIPEGRFHAYGQDLIVRKGELLFSG--PPDQPYLNIEAIRNPDATED------------------------------DVIAGVRVTGLADEPK | |||||||||||||
3 | 5vtgA | 0.17 | 0.09 | 2.82 | 0.33 | HHpred | ----------------------------------------------------------------NLFTLDGRVDVPARIVVHD--------PINSNLIVHVGNNVRIDAF--GL-------KAR-----LTGDL-NVVQDKQG-LGLNGQINIPEGRFHAYGLIVR--KGELLFSG--PPDQPYLNIEAIRNPD--AT----------------------------EDDVIAGVRVTGLADEPK | |||||||||||||
4 | 3osqA | 0.12 | 0.11 | 4.09 | 0.69 | MUSTER | KANFKIRHNIEDGGVQLAYHYQQNTNHYLSTQSKLSKDPNRDHMVLLEFVTAAGITLGMDELYKGVSLFTGVVPILVELDGDVNGHEGDATYGKLTLKFICTTGKLPVPWPTLVTTLVQCFSRYPDHMKQHDFFKSAMPEG---YIQERTIFFKDDGNYKTRAEVKFEGNRIELKGIDFKEDGNILGHKLEYNFNGGKYDIKDVGVDNAGAKAGLTFLVDLIKNDYSIAEATAMTINGPWAWSN | |||||||||||||
5 | 3lycA | 0.13 | 0.09 | 3.00 | 1.40 | CNFpred | PTEFMVTANSR----NLKKLAAAG-STHVNINSPLQA----EEFEAGLAG-------------------SGIIQFHDTASFTN-----LKIEIAGSGDFVGHKVYCEELNGDMAGSNTIV---------------------LGGTVGIAEFSIASGTVRAFDCTMDELECKIAGSGDIEAF---VVNKIKAEIAGSGSVKYKGDP----------------------QDIQKKVMGSGKIEKVE | |||||||||||||
6 | 5vtgA | 0.14 | 0.07 | 2.39 | 0.88 | HHsearch-2 | LFTLDGRVDVPWARIVVHD--------PINSNLIVHVGN---NVRID----A-------------F-GLKARLTGDLNVVQDK-------QGLGLNGQINIPEGRFHAYG-----------------------------Q---------DLIVRKGELLFS--------------G--PPDQPYLNIEAIRNPDA-----------------------------TEDDV-IAGVRVTGLADEPK | |||||||||||||
7 | 1dabA1 | 0.12 | 0.10 | 3.64 | 0.86 | Neff-PPAS | --DWNQSIVKTGERQHGIHIQGSDPGGVRTASG------------TTIKVSGRQA------QGILLENPAAELQFRGSVTSSGQLSDDGIRRFLGTVTVKAGKLVADHATLANVGDTWDDDGIALYVA----------GEQAQASIADSTLQGAGGVQIERGANVTVQRSAIVDGGLHIGDLPPSRVVLRDTNVTAVPASGAPAAVSVLGASELTLDGGHITGGRAAGVAAMQGAVVHLQRATI | |||||||||||||
8 | 5vtgA | 0.17 | 0.09 | 2.82 | 0.82 | HHsearch | LFTLDGRVDVPWARIVVHD--------PIN-------------SNLIVHVG-------------------N----NVRIDAFGL-----KARLTGDLNVVQDKQ--------------------------------------G-LGLNGQINIPEGRFHAYGLIVRK--GELLFSG--PPDQPYLNIEAIRNPDA-----------------------------TEDDV-IAGVRVTGLADEP- | |||||||||||||
9 | 1lf9A1 | 0.11 | 0.09 | 3.14 | 0.69 | SP3 | TKDAISKVEKFTDKSLGYKLVNTDKKGRYRITKDIFTDVKRNSLIMKAKFEALE--------GSIHDY---KLYLAYDPKNQGSYNEGYVIKANNNEMLMAKRDTALSSNIGWKGYSIGYYKVNDIMTDLDENKQMTKHYDSARGNIIEGAEIDLT------------------------KNSEFEIVLSFGQSDSEAAKTALETLGED----YNNLKNNYIDKYCNTLNNFN----GKAN--S | |||||||||||||
10 | 3g3lA | 0.11 | 0.10 | 3.71 | 0.78 | PROSPECTOR2 | PAEIAGTITDATTGQELTTAKVTLGDKSVTSSFNEQVNYKAEGYALVVSADGYYPVKRQVYLNQVSDGQTSVATVNVALVSVEAAVIPPVVPPTDP---ETDINEGEATKVADKAVEVAKPSESTVTPEEKKALDETLEAGGKVGETTPEVLADGSILAITPVKFT----------NPIQDAPAVPYFYNEGCELTGDVKEVAAPVAVAADIQKAFLSNAAKALNNAGFVQKIGYTRISVLNGS | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |