Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | AAFLIGLMGAGHCVGMCGGVAAAITIGMPNNTHQKRRWIYLLNYNIGRLVSYTIAGGLIGAALAGISTLNGTSNPLVYMRLFAALMMIVLGLYIGQWWAGLSQIERVGQKIWRHISPIATSLLPLKSPVKALPFGFLWGWLPCGLVYSTLTWAAVSGSALNGAAVMFAFGLGTLPAMLAVGGFADKLKNWLKNRIFRRISALLLIIYGV |
1 | 2n4xA | 0.18 | 0.15 | 4.84 | 1.62 | SPARKS-K | | MAFALGILSVFPAVLPVVPLI---FAGSR------GRALDAFLIVAGLTISMLILGYTA-------------SLFFGFFRVVAMLFLLIFALILLSDEEKVSIFASRMTSGL-------SWKIQTLPSFFGMLLAFLWL--PA--ILPFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKFVKAN-FQLIRKVTGAIVLLYLA |
2 | 5vkvA | 0.18 | 0.16 | 5.14 | 1.66 | FFAS-3D | | AAFLAGVLSFLSCVLPLVPTYLFYLGGARG-----RPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHRQ------TLARVGGVVLVLFGLYMLGLRPR--------------WGVSLRYEGETSRPLGAFLLGATLALGWTPCIGPILGAILTLTAVGGGVGFLLAYILGLAVPFFVVALFADRIKGWLRRHYVEVLAGVVLVLVGV |
3 | 5vkvA | 0.20 | 0.17 | 5.52 | 1.67 | HHpred | | AAFLAGVLSFSPCVLPLVPTYLFYLGGAR-----GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFE------HRQTLARVGGVVLVLFGLYMLGLRP-RW--G-V----SLRY----EG--ETSRPLGAFLLGATLALTPCGPILGAILTLTA---VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLISHYVEVLAGVVLVLVGV |
4 | 2n4xA | 0.18 | 0.15 | 4.84 | 1.52 | MUSTER | | MAFALGILSVFPAVLPVVPLIFAGS---------RGRALDAFLIVAGLTISMLILGYTASLFF-------------GFFRVVAMLFLLIFALILLSD--------ELDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFL-ILPFAGIAISQTLLSE---NPLVMLSYGLGMAVTIAAVFKMGEKFVKAN-FQLIRKVTGAIVLLYLA |
5 | 3rkoB | 0.11 | 0.11 | 3.80 | 1.17 | CNFpred | | DGLSLTMLSVVTGVGFLIHMYASWYMRGEE--GYSRFFAYTNLFIASMVVLVLAMYLGWEGVGLCSYLLIGF-AMKAFVVTRVGDVFLAFALFILYNELGTLNFREMVELAPAHFADGNNMLM---WATLMLLGGAVGKSAQ-LPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVL--HLVGIVGAVTLLLAGF |
6 | 5vkvA | 0.21 | 0.18 | 5.77 | 3.49 | HHsearch-2 | | AAFLAGVLSFSPCVLPLVPTYLFYLGGA---R--GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEH------RQTLARVGGVVLVLFGLYMLGLRP-R-WG-V-----SLRY----E--GETSRPLGAFLLGATLALTPCGPILGILTLTA----VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLISHYVEVLAGVVLVLVGV |
7 | 2n4xA | 0.18 | 0.15 | 4.99 | 1.66 | Neff-PPAS | | MAFALGILSVFPAVLPVVPLIFAGS---------RGRALDAFLIVAGLTISMLILGYTASLFF-------------GFFRVVAMLFLLIFALILLSD--------ELDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLWLPAILPFAGIAISQTLLSENPLVMLSYGLGMAVTIAAVFKMGEKFVKAN-FQLIRKVTGAIVLLYLA |
8 | 5vkvA | 0.21 | 0.18 | 5.64 | 4.30 | HHsearch | | AAFLAGVLSFSPCVLPLVPTYLFYLGGA---R--GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEH------RQTLARVGGVVLVLFGLYMLGLRP-R-WG-V-----SLRY----E--GETSRPLGAFLLGATLALTPCGPILGILTLTA----VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLRSHYVEVLAGVVLVLVG- |
9 | 2n4xA | 0.19 | 0.16 | 5.23 | 1.33 | PROSPECTOR2 | | MAFALGILSVSPAVLPVVPLIFAGS---------RGRALDAFLIVAGLTISMLILGYTASLFFG-------------FFRVVAMLFLLIFALILLSDE--------LDEKVSIFASRMTSGLSWKIQTLPSFFFGMLLAFLPAILPFAGIAISQTLLS--ENPLVMLSYGLGMAVTIAAVFKMGEKFVKANF-QLIRKVTGAIVLLYLA |
10 | 5vkvA | 0.21 | 0.17 | 5.47 | 1.43 | SAM | | -AFLAGVLSFSPCVLPLVPTYLFYLGGA------GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEH------RQTLARVGGVVLVLFGLYMLGLRP--------------RYEG------ETSRPLGAFLLGATLALTPCPILGAILTLTA----VGGGVGFLLAYILGLAVPFFVVALFADRIKGWLRSHYVEVLAGVVLVLVGV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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