Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | ETYLKLEKYNEALTDFNNLLELEPNNVYILRLRGETYQKLESYNGALTDFNNLLKKDPYDTLVLRLR |
1 | 2xpiA3 | 0.22 | 0.22 | 7.04 | 1.68 | SPARKS-K | | HAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL |
2 | 2vq2A1 | 0.26 | 0.22 | 6.90 | 1.64 | FFAS-3D | | -EYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP--------- |
3 | 6hpgA | 0.16 | 0.16 | 5.43 | 1.30 | HHpred | | NAAYKGKQWNKAVNFYTEAIKLNGANATYYCNRAAAFLELCCFQQAEQDCTKAMLIDKKNVKAYLRR |
4 | 6b85J | 0.22 | 0.22 | 7.04 | 1.49 | MUSTER | | SVLEKLKRLDEAAEAYKKAIELKPNDASAWKELGKVLEKLGRLDEAAEAYKKAIELDPEDAEAWKEL |
5 | 3cv0A | 0.25 | 0.25 | 7.85 | 0.95 | CNFpred | | LSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAAL |
6 | 2c2lA | 0.19 | 0.19 | 6.24 | 0.32 | HHsearch-2 | | NRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFL |
7 | 2xpiA5 | 0.13 | 0.12 | 4.12 | 1.55 | Neff-PPAS | | IYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------- |
8 | 4xi0A1 | 0.24 | 0.24 | 7.43 | 0.44 | HHsearch | | QRCLRRGSPEEALRYLKEWARHEKNDPEPLYQMGIALANLGDYQRAVTVFDKVLKLRPNHFMASYR- |
9 | 4xi0A1 | 0.24 | 0.24 | 7.45 | 0.84 | PROSPECTOR2 | | ARCLRRGSPEEALRYLKEWARHEKNDPEPLYQMGIALANLGDYQRAVTVFDKVLKLRPNHFMASYRK |
10 | 4u04A1 | 0.21 | 0.21 | 6.63 | 0.88 | SAM | | -EMKRQGKREKAQKLFMHALKMDPDFVDALTEFGIFSEEDKDIIQADYLYTRALTISPYHEKALVNR |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|