Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | AVITTNYDKLIEQAYALTGRNIPPTYTFDSSPDLISAVSHNRFFVLKVHGDIDRKGTIVLSERDYRDLIYRSPGYRAALNTLFITRTVLFVGASLTDPDITLVLESVSESFAGKGPRHYALLPRREAGDAESDHW |
1 | 2q9uA2 | 0.09 | 0.07 | 2.84 | 0.70 | SPARKS-K | | TVVLDSMALALLDGARSTGCE-TVLLEMTDITKVALHTYDSGAVAFAS---PTLNNTMM-------------PSVAAALNYVRGLPAFAFGAFGWSNRAVPDIVAELRDGCKDEKG----ITFKFNYTEELLEQA |
2 | 5kc9A1 | 0.10 | 0.09 | 3.26 | 0.62 | FFAS-3D | | -----RLNDVMLRLVTELRWQKFVMFYDSEYQSFLDQASRLGLDVSLQK-------VDKNISHVFTSLFTTMK--TEELNRYRDTLRRAIL--LLSPQGAHSFINEAVETNLASKDSHWVFV-NEEISDPEIL-- |
3 | 3k35F1 | 0.17 | 0.12 | 3.89 | 0.78 | HHpred | | FLVSQNVDGLHVRS----GF--------------------PRDKLAELHG-LDWEDSL--PD----------RDLALADEASRNADLSITLGTSLQIRPSGNLPLATKRR----GGRLVIVNLQPTKHDRHADL- |
4 | 2lciA | 0.14 | 0.12 | 4.05 | 0.80 | MUSTER | | LINTNN-DELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAE---------EKNFEKIL-------ISNDKQLLKEMLELISKLGYKVFLLLQDQD---ENELEEFKRKIESQGYEVRKVTDDEEALKIVREFM |
5 | 2h3hA | 0.11 | 0.10 | 3.49 | 0.64 | CNFpred | | -------LQMLESFIAEG---NGIAIAPSDPTAVIPTIKKAGIPVVTLDTDSPGRYVYIGTD-----NYQAGYTAGLIMKELLGKGKVVIGTGSLTAMNSLQRIQGFKDAIKDSEIEIVDILNDEEDGARAVSLA |
6 | 2h59A | 0.19 | 0.14 | 4.53 | 0.80 | HHsearch-2 | | AVITQNIDRLHQRAGSK--------------------------KVIELAGNVEEPNIVFFGENLP------QDALREAIGLSSRASLMIVLGSSLVVYPAAELPLITVRS----GGKLVIVNLGETPFDDIATLK |
7 | 2lciA | 0.15 | 0.13 | 4.47 | 0.71 | Neff-PPAS | | ILINTNNDELIKKIKKEVENQGYQVRDVNDSDELKKEMKKLAEE--------KNFEKILIISND-------KQLLKEMLELISKLGYKVFLLLQDQD---ENELEEFKRKIESQGYEVRKVTDDEEALKIVREFM |
8 | 1s5pA | 0.18 | 0.13 | 4.10 | 1.17 | HHsearch | | LLVTQNIDNLHERAGNT--------------------------NVIHMHGELLKVPHVVWFGEMP-------LGMDEIYMALSMADIFIAIGTSGHVYPAAGFVHEAKLH----GAHTVELNLEP--SQ-EFAE- |
9 | 4ksiA1 | 0.09 | 0.08 | 3.09 | 0.70 | SP3 | | -------------AGDTLGLTRPNESDAPKAKDTAVVQWQGDLLAIGA--TARDENSKFKNPLLQQLDSELNGLLSAASSEEFPGGRITLVGLASSPTSYHSLGQAAAAAAKSSQARNIAVALASGLSAESKINS |
10 | 3canA | 0.11 | 0.10 | 3.51 | 0.60 | PROSPECTOR2 | | GTFCLHPEFLIDKRCGQQGIHRAVDTTLLARKETVDEVRNCELLLIDLKS----------DSTVHQTFCVPNELILKNIRRVAEADFPYYIGVNADEKNIKLSAEFLAS--LPRHPEIINLLPKQTPSEEVQQQC |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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