>PF13218 (321 residues) KRMTSEVVAFSPSRLNLAELEERLASQTFFTQSDIEYAEHDENSFYYTCHYGDEELLFLV SLAPRAPELEINPYYSTDPLSAGLLAEVNQTEQDIYVECLLQNDVLRSYRYQLKMVQILV PDLLLGIDISAAGRGFTREWLNFQLENDVQLNIESLYTIHAIYDTENSPPTMYWFHTHGL LRCGIPEVELLLPHTINAYYGIPDLLRSFIGQSLNEGKVLFNEPMLCGQTEKQLEYIVAL PYQEGIRQINKNTPIDQLKPLEEIDYSHDNMPENEFLGDRGDRDDQHDHPSCMLFRVNES SPVLQTFFRGFDDDAAIMFYR |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | KRMTSEVVAFSPSRLNLAELEERLASQTFFTQSDIEYAEHDENSFYYTCHYGDEELLFLVSLAPRAPELEINPYYSTDPLSAGLLAEVNQTEQDIYVECLLQNDVLRSYRYQLKMVQILVPDLLLGIDISAAGRGFTREWLNFQLENDVQLNIESLYTIHAIYDTENSPPTMYWFHTHGLLRCGIPEVELLLPHTINAYYGIPDLLRSFIGQSLNEGKVLFNEPMLCGQTEKQLEYIVALPYQEGIRQINKNTPIDQLKPLEEIDYSHDNMPENEFLGDRGDRDDQHDHPSCMLFRVNESSPVLQTFFRGFDDDAAIMFYR | |||||||||||||||||||
1 | 1t47A | 0.08 | 0.06 | 2.47 | 0.55 | SPARKS-K | HGDGVVDLAIEVP--DARAAHAYAIEHGARSVAEPYELKDEHGTVVLAAIATYGKTRHTLVDRTGYDGPYLPGYVAAAPIVEPPAHRT--FQAIDHCVGNVEGRMNEWVGFYNKVMG-----------FTNMKEFVGDDIAT----------EYSALMSKVVADGTLK-----------------VKFPINEPALAKKKSQIDEYLEFYG----------GAGVQHIALNTGD--------IVETVRTMRAAGVQFLDTPDSYYDTLGEWVGDTRV--PVDTLRELK-----ILADRDEDGYLLQIFTKPVQDRPTVFFEI | |||||||||||||
2 | 2ke5A | 0.11 | 0.06 | 2.02 | 0.66 | FFAS-3D | -----KVIMVGSGGVGKSALTLQFMYDEFVE----DYEPTKADSYRKKVVLDGEEVQIDILDTAGL-----------EDYAAIRDNYFRSGEGFLLVFSITEHESFTATAEFREQILRVKAEPLLVVGNKSDRRQVPVEEARSKAE-----------------------------------EWGVQYVE----TSAKTRANVDKVFFDLMREIRTKKMSENK--------------------------------------------------------------------------------------------------- | |||||||||||||
3 | 4bkwA | 0.13 | 0.07 | 2.47 | 0.35 | HHpred | ----------------------------------------------------------------------------------------------------------------------------LISTYAV-EEKPSQISVMQQLED--PDPLNLLSMVKIVNYVN----RKCWFTTKGMHAVGQSEIVILLQCLPDEKLPIFNHFVQLYRDALAGNVVSNLGHSFFGYSLQDLPYLFIQPWAKVYRLYP--CPLFSV------RFRKPFGTGHTIMNLLADFRNYLPVVQGLVVDMEVRKTIPSNRYNEMM--------- | |||||||||||||
4 | 4wy5A | 0.09 | 0.08 | 3.09 | 0.57 | MUSTER | HPVYAAAFAAMKERPPIHTLLKVVRESSEARQLAANIKLPEVIEEDKVVESDGKTLKLTIVRPPGTEDQILFVFGSKYTHIKPVRDLTVKANVVTVFV-LSPEAAIEEIYAAILWVRENAAEALAVAGDSAGA-TLSAAVSIYAKEKGLSAAIKTQVLIYPATAVSHAKYESYKLFGNGDYILSAEDLKFFSNAYLP--APASELNDKLATLELATKADLEGLPALLFTAESDVLRDEGEKYAQQLAEAGVDV---AAVRVLGAVHGFITVPVET-----PQYRFTIN--------------TIVAHLRDIYAKYN----- | |||||||||||||
5 | 3c7nA | 0.08 | 0.06 | 2.31 | 0.91 | CNFpred | -------------------DFEQESKHFTSKLVELD-----DKKTGAEVRFAGEKHVFSATQLA---------AMFIDKVKDTVKQDTKANITDVCIAVPP-WYTEEQRYNIADAARIAGLNPVRIVNDVT------AAGVSYGIFKTDLPEGPRIVAFVDIGH------SSYTCSIMAFK---KGQLKVLGTA-CDKHFGGRDFDLAITEHFADEFKID-NAPFSVESVMNDVDVSSQLSREELEELVKPLRVTEPVTALAQAKLSA-------------------EEVDFVEIIGG----------------------- | |||||||||||||
6 | 2qnkA | 0.10 | 0.06 | 2.31 | 0.42 | HHsearch-2 | ----------SERRLGVRAWVKENRGSFQLKVKDYHIEE--GEEVFYQLEGQGKHRDIFLLPARVPHSP--------QRF---------ANTVGLVVERRRL---------------------------------------------------------------ETELDGLRYYVG-----DTDVLFEKWF---YCKDL-GTQLA-PIIQEFFSSPDLLKEPPFPLST-RSIE----P-SLDAWLDSHQAGTPLSLFG--DTYETQ------VIAYGQGS-SEGLRQ-NVDVWLWQLEGSVTGGRRLSLLVLAGTSYAWE | |||||||||||||
7 | 3jc8Ma | 0.09 | 0.08 | 3.17 | 0.80 | Neff-PPAS | --EAIVDGALMNSTAIVQAVQDLMSELKVGKDVAIGVSGHSVIIKKIQMPRMSQDELEESIQWEAEQYIPFDVKDVNIDTQILDGGGNDATGQMDVLLVAAKKDMINDYTTVVSEAG--LAPVVVDVDAFAVQNMFSVNYDVP------------------------ERETVVLINAGA----SVVNINIISNGATVFTRDVTIGGNQFTEEIQKQLNVSYEEALKIGGNGADADAVVPQDVERVLSSVAEQVAGEIQRSLDFYAGTAADSNFSKVYGGTAKIPARTGVPVEILNPFRKIEVDNRKFDPAFVMDVAPMAAV | |||||||||||||
8 | 4bkwA2 | 0.14 | 0.07 | 2.23 | 0.42 | HHsearch | ---------------------------------------------------------------------------AMNLIPE------DGLPPILIST-------------------------YAVEEKP------SQISVMQQLED--PDPLANLLMVKIVNYVN----RKCWFTTKGMHAVGQSEIVILLQCLPDEKLPIFNHFVQLYRDALAGNVVSNLG------------HS-F---------FS-----------------------QSFLGSKEH--------GGFLYVTSTQDLVLPIRLMLRLGAEYRLYV- | |||||||||||||
9 | 3ktnA | 0.08 | 0.06 | 2.25 | 0.85 | SP3 | LE--TALITKLPANRLGEAGKAALRKL-GISDQWVGEKGDH-IGSFFAEGYGIRPTQVTYQNRHQSAFGISEA----KDYD--FEAFLAEVDVHICISLSLTEKTRDAALILAQKAHAY--QKKVCFDFNYRPSLNTANSALFRQQY-----ERILPYCDIVFGSRR-------------------DLVELLGFIPREDLEGEAQETELIQRFSQYNLEQNQNYLSGYLYTQNEYQQRPLSLEKAVTFAPLTTVKQVNHVLEHPNIDLIREGH------------------------------------------------ | |||||||||||||
10 | 4on1A | 0.08 | 0.07 | 2.76 | 0.80 | PROSPECTOR2 | PQLEHVLN---LRSMDYEDLAGVLSKISNTEHTIMLQEGSELWTTSIEIEESNRPVYLFEGQDKDSINAILSQSYATIRL--------QRGGDLIDYIVYKDKERMAEIANYYQ--NHYLDKIVVCNTGDIKNIRIDITKAIGNNPFKGLPIKD--------YPTEATYPATLEFMLIKEKDGGSLETIKDSSHKGGASDYEVSALESFQNYLDEVKGQDKKPYILLRDGTWDSGKTFGYAS--------GIGVIHLNNPRGNFEVAAISTTSSSHPYTLAHEAEHVDNEQDLMYTWYSPQVTPNHLSADNWVRMLECIQK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |