>PF13148 (363 residues) QTDPAMAGAVALAVLSTCAGGRLEVEPRPGWREPVNLFLAVVADPGERKSPVHGALTAPL LAAEHTLAARVEPVAKENAALRDIAGRAAEQAKNVAARADNDRRADLTAEAVVAALAAEA VTVPSLPRLFADDATPEALTSLMADNGGRMALISDEGGIFDTLAGRFSAAPNLDPYLKGH AGRPMRVDRKGRDAEFIPRPALTVGVMIQPSVLRKFGADADLSGRGLVARFLFVLPASLA GWRDVNSPPIPDHITDTYARTIHGLAATLAEWEDPAVITLTPDADTIRTAHAEHVENQLR PGGEYHAMREWANKLPGTTLRIAGLLHMAHHPGDGWRHPIDAEQMRGAVHLADALAAHYR TAL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | QTDPAMAGAVALAVLSTCAGGRLEVEPRPGWREPVNLFLAVVADPGERKSPVHGALTAPLLAAEHTLAARVEPVAKENAALRDIAGRAAEQAKNVAARADNDRRADLTAEAVVAALAAEAVTVPSLPRLFADDATPEALTSLMADNGGRMALISDEGGIFDTLAGRFSAAPNLDPYLKGHAGRPMRVDRKGRDAEFIPRPALTVGVMIQPSVLRKFGADADLSGRGLVARFLFVLPASLAGWRDVNSPPIPDHITDTYARTIHGLAATLAEWEDPAVITLTPDADTIRTAHAEHVENQLRPGGEYHAMREWANKLPGTTLRIAGLLHMAHHPGDGWRHPIDAEQMRGAVHLADALAAHYRTAL | |||||||||||||||||||
1 | 1g8pA | 0.16 | 0.12 | 4.02 | 1.06 | FFAS-3D | ---EDMKLALLLTAVDPGIGG-----------------VLVFGDRGTGKSTAVRALAALLPE------------------------------IEAVEGCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGLLARANRGY-LYIDECNLL--------EDHIVDLLLDVAQSGENVVERDGLSIR--HPARFVLVGSGNP--------EEGDLRPQLLDRFGLSV---------EVLSPRDVETRVEVIRRRDTYDADPKA----FLEEWRPKDMDIRNQI-LEARERLPKVEAPNTALYDCARGELTLLRSARALAALE-----GATAVGRDHLKRVATMA---LSHRLRV- | |||||||||||||
2 | 3ja83 | 0.15 | 0.11 | 3.72 | 1.32 | HHpred | -------DHIKKAILLMLMGGVEKN-LENGSHLRGDINILMVGDPSTAKSQLLRFVLNTASLAI-------------------------------ATTGRGSSGVGLTAAV------T---TDR-----ETGERRLEAGAMVLA--DRG-VVCIDEFDKM--------TDVDRVAIHEVMEQQTVTIAKAG--IHTTLNARCSVIAAANPVQYDVNRQNIA-LPDSLLSRFLLFVTDDINEIRDRSTHRVTIPFLRKYVQYAK----------ERVIPQLTQEAINVIVKNYTDLRNDDN-----TKKSPITARTLETLIRLATAHAKVRLS-----KTVNKVDAKVAANLLRFALL------ | |||||||||||||
3 | 3ja85 | 0.15 | 0.12 | 3.91 | 1.36 | HHsearch-2 | RNPKLYFEDIKKAIVCLLMGGSKKI-LPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAV-------------------------------YTSGKGSSAAGLTASV------QRD---PMTREFYLEGG-----AMVLA--DGGV-VCIDEFDKM--------RDEDRVAIHEAMEQQTISIAKAG--ITTVLNSRTSVLAAANPGRYDDLKSDNIDFQTTILSRFMIFIKDDHNEERDINGSEISIEKMKRYITYCR----------LKCAPRLSPQAAEKLSSNFVTIRKQLLINELSTER-PITIRQLEAIIRITESLAKLELS-----PIAQERHVDEAIRLFQASTMDAAS-- | |||||||||||||
4 | 3ja85 | 0.15 | 0.12 | 3.91 | 1.07 | HHsearch | SIAPSIFEDIKKAIVCLLMGGSKKI-LPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAV-------------------------------YTSGKGSSAAGLTASV------Q---RDPMTREFYLEGG-----AMVLA--DGGVVC-IDEFDKM--------RDEDRVAIHEAMEQQTISIAKAG--ITTVLNSRTSVLAAANPIRYDDLKDNI-DFQTTILSRFMIFIKDDHNEERDENGSEISIEKMKRYITYCRL----------KCAPRLSPQAAEKLSSNFVTIRKQLLINELSTER-PITIRQLEAIIRITESLAKLELS-----PIAQERHVDEAIRLFQASTMDAAS-- | |||||||||||||
5 | 2qenA | 0.10 | 0.08 | 3.04 | 1.00 | PROSPECTOR2 | MTRREDIFEEESRKLEESLENYP--------------LTLLLGIRRVGKSSLLRAFLNERPDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREV------------------FRELNDLGEELGEFIVAF-DEAQYLRFYGSR-GGKELLALFAYAYD----------------SLPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDREVNLDVPENEIEEAVELLVVFGVEYLRNGD---------FGRAMKRTLEVAKGL---------IMGELEELRRRSPRYVDILRAIALGYNRKGTKIPEPRLYALLENLKKVVATVLR-I | |||||||||||||
6 | 3ja87 | 0.13 | 0.10 | 3.44 | 1.39 | SAM | -----------KALLLLLVGGVDKRVG-DGMKIRGDINVCLMGDPGVAKSQLLKAICKISPRGVYT-------------------------------TGKGSSGVGLTAAV--------------MKDPVTDEMILEGGALVLADN---GICCIDEFDKM--------DESDRTAIHEVMEQQTISISKAG--INTTLNARTSILAAANPNPRLSPLDNIN-LPAALLSRFLFLMLDIPSRDD---DEKLAEHVTYVHMHNKPSKMREYIAYAKTKRPVMSEAVNDYVVQAYIRLRQDSKREMDKFSFGQATPRTLLGIIRLSQALAKLRLA-----DMVDIDDVEEALRLVRVSK------- | |||||||||||||
7 | 3ja85 | 0.15 | 0.12 | 3.89 | 1.43 | HHpred | -------EDIKKAIVCLLMGGSKKI-LPDGMRLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAV-------------------------------YTSGKGSSAAGLTASV------Q---RDPMTREFYLEGG-----AMVLA--DGG-VVCIDEFDKM--------RDEDRVAIHEAMEQQTISIAKAG--ITTVLNSRTSVLAAANPGRYDDLKSDNIDFQTTILSRFMIFIKDDHNEERDINGSEISIEKMKRYITYCRL----------KCAPRLSPQAAEKLSSNFVTIRKQLLINELSTER-PITIRQLEAIIRITESLAKLELS-----PIAQERHVDEAIRLFQASTMDAAS-- | |||||||||||||
8 | 3ja87 | 0.12 | 0.09 | 3.24 | 1.33 | HHsearch-2 | SIAPEIYLDVKKALLLLLVGGVDKR-VGDGMKIRGDINVCLMGDPGVAKSQLLKAICKISPRGV-------------------------------YTTGKGSSGVGLTAA------VMKDP---VTDEMILEGGA-----LVLA--DNG-ICCIDEFDKM--------DESDRTAIHEVMEQQTISISKAG--INTTLNARTSILAAANPLYYNSPLDNIN-LPAALLSRFILFLLDIPSRDDDLDFTPVEPSKMREYIAYAK----------T-KRPVMSEAVNDYVVQAYIRLRQDSKREMDKFSFGQATPRTLLGIIRLSQALAKLRLA-----DMVDIDDVEEALRLVRVSKESLYQ-- | |||||||||||||
9 | 3ja85 | 0.17 | 0.13 | 4.16 | 1.34 | SAM | -----------KAIVCLLMGGSKKILP-DGMRLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-------------------------------SGKGSSAAGLTASV--------------QRDPMTREFYLEGGAMVLADG---GVVCIDEFDKM--------RDEDRVAIHEAMEQQTISIAKAG--ITTVLNSRTSVLAAANPDDLKSPGDNID-FQTTILSRFIFIVKDDHNEEREENGSEISIEKMKRYITYCR----------LKCAPRLSPQAAEKLSSNFVTIRKQLLINELESER-PITIRQLEAIIRITESLAKLELS-----PIAQERHVDEAIRLFQAST------- | |||||||||||||
10 | 2qenA | 0.11 | 0.09 | 3.10 | 0.65 | SPARKS-K | -----MLFDLRPKTRREDIFDREEESRKLEESLENYPLTLLLGIRRVGKSSLLRAFLNECRELYAHITR---------EELIKELQSTISPFQKFQSKFKISLNLK---------FLTLEPRKLS----------LREVFRELNDLGGEFIVAFDEAQYLRFYGSRGGK-ELLALFAYAYDSLP---------------NLKIILTGSEVGLLHDFLKITDYE-----------SPLYGRIAGEVLVKPFDK---DTSVEFLKRGFREVLDVPE-------NEIEEAVELLLVVFGVEYLRNGDFGLIMGELEELRRRSPRYVDILRAIALGYN------RWSLIRDYLAVLYALLENLKKMN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |