Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | TLFQAAPKEEGRGGWKYIIQERNDKYEIVDELLKNQMSVELYFNEYDEVKITLYKDGMPISTMQRIAISKVELDEEEEGIQFVLERMPSRMIRLQLKPYLAIEMGPYWEVCDD |
1 | 6cp9B | 0.14 | 0.12 | 3.93 | 0.81 | SPARKS-K | | SFFESEPVSFERDNISFLYTAKNK----------CGLSVDFSFSVVEWIQYTVRLHENEILHNSIDGVSSFSIRNDNL----------GDYIYAEIINKIEIRIRPDIKIKSS |
2 | 6cp9B | 0.17 | 0.14 | 4.65 | 0.60 | FFAS-3D | | -FFESEPVSFERDNISFLYTAKN----------KCGLSVDFSFSVVEWIQYTVRLHENEILHNSIDGVSSFSIRNDNLGDYIYAEIITKELIEIRIRPDIKIKSS-------- |
3 | 6cp9B | 0.15 | 0.13 | 4.44 | 0.61 | HHpred | | SFFESEPVSFERDNISFL-------YTAK---NKCGLSVDFSFSVEGWIQYTVRLHENEILHNSIDGVSSFSIRNLGDYIYAEIITKEINKIEIRIRPDIKIKSSSV------ |
4 | 6cp9B | 0.16 | 0.14 | 4.68 | 0.98 | MUSTER | | SFFESEPVSFERDNISFLYTAKN----------KCGLSVDFSFSVVEWIQYTVRLHENEILHNSIDGVSSFSIRNDNLGAEIITKEL-INKIEIRIRPDIKIKS---SSVI-- |
5 | 5azwA | 0.09 | 0.07 | 2.66 | 0.71 | CNFpred | | -------------GYFVSIDA-HAEECFFERVTS-GTKMGLIFEVFLDIDVEITGPNKGIYKGDRESSGKYTFAAMDGTYKFCFSNR-MTPKIVMFTIDIG------------ |
6 | 6cp9B | 0.15 | 0.13 | 4.45 | 0.84 | HHsearch-2 | | SFFESEPVSFERDNISF-------LYTAK---NKCGLSVDFSFSVEGWIQYTVRLHENEILHNSIDGVSSFSIRNDGDYIYAEIITELINKIEIRIRPDIKIKSSSVI----- |
7 | 6cp9B | 0.16 | 0.14 | 4.69 | 1.07 | Neff-PPAS | | SFFESEPVSFERDNISFLYTAKN----------KCGLSVDFSFSVVEWIQYTVRLHENEILHNSIDGVSSFSIRNDNLGDYIYAEIITKEKIEIRIRPDIKIKSSSVI----- |
8 | 6cp9B | 0.15 | 0.13 | 4.45 | 0.94 | HHsearch | | SFFESEPVSFERDNISF-------LYTAK---NKCGLSVDFSFSVEGWIQYTVRLHENEILHNSIDGVSSFSIRNLGDYIYAEIITELINKIEIRIRPDIKIKSSSV---I-- |
9 | 6cp9B | 0.15 | 0.13 | 4.44 | 0.72 | SP3 | | SFFESEPVSFERDNISFLYTAKN----------KCGLSVDFSFSVVEWIQYTVRLHENEILHNSIDGVSSFSIRNDNLGAEIITKEL-INKIEIRIRPDIKIKSSSVI----- |
10 | 4on1A1 | 0.10 | 0.10 | 3.63 | 0.49 | PROSPECTOR2 | | PQLEHVLNSKISNTEHTIMLQEGSELWTTSIKAIHGVEIEELFEGQDKDSINAILQSYATIRLQRDLIDYIVYKDKEEIANYYQNHYLDKIVVCNTGDIKNIRIDIKAIGNNP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|