Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | TVLGLKQSFLTTQTRLLSQPLAPSRSWHKTNDAAEDGLPEKAVEDALVRLNHILQQHSRRVYAPQATRHVAEQIDRLYWNAGERAIARDGEADAEGLSVGADYASPETIASLPPAWDSERDSTANPMEARRYADLVVHLQSLAARKEEAEARVQRLRRMQGMLAPFQEPRGQEGESSSGSVQENLVTRGGEVEKELERMRMLLARVGDR |
1 | 6ewyA | 0.10 | 0.08 | 2.85 | 1.02 | FFAS-3D | | TIAALIADVANQRLQDLSDEV---QAEQESV---------NKAMVDVETARDNAAAAEDDLESQRAVKDANAAIAAAQHRFDTFAAATYMNGPSVSYLSASSIATVTAAKTL------------SASSQAVMANLQRARTERVNTESAARLAKQKADKAAADAK----------------------ASQDAAVAALTETRRKFDEQREE |
2 | 5nnvA | 0.11 | 0.11 | 3.79 | 1.16 | Neff-PPAS | | ------KEEELAESSAISAKEAKIEDTRDKIQALDESV--DELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETQAEVKQLRAQVKEKQQLSNETELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSES--SSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQ |
3 | 5cwmA | 0.15 | 0.14 | 4.65 | 0.75 | SPARKS-K | | LLRQAKEKDLEKALRTAEEAAREAKKVLEQAEKEG---DPEVALRAVELVVRVAELLLRISGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKPEVARRAVELVKRVAELLERIARESGSE-----------------EAKERAERVREEARELQER |
4 | 5nenA1 | 0.11 | 0.10 | 3.44 | 1.02 | FFAS-3D | | -VDSLRDQYYTTLATEGLSIVTFSPILDAVKDK-------PRVAEIIALQTQLFASRRQAL--QSEIDGYKQSMDGIRFQLKGLQDSRGNKQIQLSSLRE----QMNSMKQLAAD--GYLPRNRYLEVQRQFAEVNSSIDETVGRIGQLQKQLLESQRIDQRFADYQ-----------REVRTQL----AQTQMDASEFRNKLQMADFD |
5 | 4l3iA | 0.17 | 0.15 | 5.01 | 0.36 | HHpred | | ---SRREVSIKRQIILC-EELDHTPSFRDVVDEDAFCLSLENIATLQKLLRQLE-QKSQN---EAVCEGLRTQIRELWDRLQIPEEEREA-VATSGSKDQCFYS-QEQRQAFAPFCA----EDYTESLLQLHDAEIVRLKNYYEVHKELFEGVQKWEETWRLFLEFERKA----------SDPNFTNRGGNLLKE-EKQRAKLQKLPK- |
6 | 5nnvA | 0.10 | 0.10 | 3.67 | 0.87 | MUSTER | | --AKEEELAESSAISAKEAKI---EDTRDKIQALDES--VDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETQAEVKQLRAQVKEKQQSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGE--EKLEEAAKHKLNDKTKTIELIALRRDQ |
7 | 5j1iA | 0.06 | 0.05 | 2.14 | 0.67 | CNFpred | | RECAQRIAEQQKAQAEVEGLGKGVARLSAEAEKV----AAPTLRSELELTLGKLEQVRS---LSAIYLEKLKTISLVIRGTQGAEEV-----------------LRAHEEQLKEAQAVPATLPELEATKASLKKLRAQAEAQQPTFDALRDELRGAQEVGERLQQRH--------GERDVEVERWRERVAQLLERWQAVLAQTDVRQRE |
8 | 6nuwG | 0.12 | 0.09 | 3.20 | 0.93 | HHsearch-2 | | -TYNSISNFIENELTALLSSLMDDL---------AGELPN-------RLLKAQVIEKRKDAMSRGKQDLLSKEIYDNESELRASQSQQIM-ELVGDISLGSELRNIEDVLKLP----------NDLKVLSEYSNLRKDLILKCQALQIGESKLSDILSQTNSINSL---D--------DDISEYFATYNGKLVVA-------------- |
9 | 2yfaA | 0.09 | 0.09 | 3.42 | 1.02 | Neff-PPAS | | -----DDTAAANTLAKLDAFSKQQAYLATTFKSPENVELGDTISAYKLSLNKMRQGYDATRAARVSMDSSAIRADQAMDALSQEVMARPEADSVRLAQYQLISKARQQLLQVRIDVRGYIAENSSANEQAALRQLDAALADTDNLKRQLPSEDARLQQFENAVLAYRDRQFRDAVANITTSRAEMTVQGADIVKRSDALYQIQLER--- |
10 | 6nuwG | 0.12 | 0.09 | 3.20 | 0.98 | HHsearch | | -TYNSISNFIENELTALLSSLMDD--L-------AGELPN-------RLLKAQVIEKRKDAMSRGKQDLLSKEIYDNESELRASQSQQIM-ELVGDISLGSELRNIEDVLKLPN----------DLKVLSEYSNLRKDLILKCQALQIGESKLSDILSQTNSINSL-D----------DDISEYFATYNGKLVVA-------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|