Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | VTLSLVQKIHFHKPFVPNISSMQTCMNCKTKITNMKSWEIQSNTQDLSVGSHSYPFSYLIPGSVPCSSSLGATAETQVKYELIAVVTYIDPHRNSFSSGHSTPRKEGSSSKKRLLQLAMPIAVTRSIPRGPDKNSLRVFPPTELTAAAVLPNVVYPKSTFPLEMKLDGVSSGDRRWRMRKLSWRIEETTRVKAHACPVHKHEL |
1 | 1cf1C | 0.16 | 0.15 | 4.89 | 1.52 | SPARKS-K | | VYVSLTCAFRYGQ-EDIDVMGLSF----RRDLYFSQVQVFPPVGASGATGANTYPFLLTFPDYLPCSVMLDVGKSCGVDFEIKAFATHSTDVEEDKIPK------------KSSVRLLIRKVQHAPRDMGPQPEASWQFFMKPLRLAVSLSKEIYHGEPIPVTVAVTNSTEKT----VKKIKVLVEQVTNVVLYSSDYYIKTV |
2 | 2wtrB | 0.16 | 0.14 | 4.58 | 1.63 | FFAS-3D | | VYVTLTCAFRYGRVGLT-----------FRKDLFVANVQSFPERLIKKLGEHAYPFTFEIPPNLPCSVTLQPGKACGVDYEVKAFCAENLEEKIHKRN---------------SVRLVIRKVQYAPERPQPTAETTRQFSDKPLHLEASLDKEIYHGEPISVNVHVTNNTNKT----VKKIKISVRQYADICLFNTAQYKCPV |
3 | 3lh9B | 0.10 | 0.08 | 2.91 | 1.76 | HHpred | | IKIEFIGQIELYYDR-------------GNHHEFVSLVKDLARPGEITQ-SQAFDFEFTHVEKPYESYT---GQNVKLRYFLRATISRRL---------------------N-DVVKEMDIVVHTLSTYPELNSKMEVGIEDCLHIEFEYNKSKYLKDVIVGKIYFL-SVEI----KIKHMEIDIIKRETTGTGPNVYHEND- |
4 | 4ll1A | 0.09 | 0.08 | 3.00 | 1.15 | MUSTER | | VRILACGVAKVL--WMQGSQQCKQTSEYLRYEDTLLLEDQPTEMVIMRPGNYEYKFGFELPGPLGTSF---KGKYGSVDYWVKAFLDRPSQPTQETKKNFEVVPDLMAP---------VSAKKEKKVSSMF-------IPDGRVSVSARIDRKGFEGDEISIHADFENTSSRI-----VVPKAAIVARHTYLANGQTKVLTQK |
5 | 2r51A | 0.11 | 0.09 | 3.17 | 2.55 | CNFpred | | IKIEFIGQIELYYD-------------RGNHHEFVSLVKDLARPGEIT-QSQAFDFEFTHVEKPYESYTGQ---NVKLRYFLRATISRR----------------------LNDVVKEMDIVVHTLSTY-NSSIKMEVGIEDCLHIEFEYNKSKYHKDVIVGKIYFLLV-----RIKIKHMEIDIIKRETTGTGPNVYHENDT |
6 | 3lh9B | 0.10 | 0.08 | 2.91 | 2.02 | HHsearch-2 | | IKIEFIGQIELYYDRG-------------NHHEFVSLVKDLARPGEITQ-SQAFDFEFTHVEKPYESYT---GQNVKLRYFLRATISRRL---------------------N-DVVKEMDIVVHTLSTYPELSIKMEVGIEDCLHIEFEYNKSKYLKDVIVGKIYFL-SVEI----KIKHMEIDIIKRETTGTGPNVYHENDT |
7 | 4ll1A | 0.11 | 0.09 | 3.37 | 1.64 | Neff-PPAS | | VRILACGVAKVLWMQGS--------QQCKQTSEYLRYEDTLLEMVIMRPGNYEYKFGFELPGPLGTSFK---GKYGSVDYWVKAFLDRPSQPTQETKKNFEVVPDLMA---PVSAKKEKKV-------------SSMFIPDGRVSVSARIDRKGFEGDEISIHADFENTSSRI-----VVPKAAIVARHTYLANGQTKVLTQK |
8 | 3lh9B | 0.10 | 0.08 | 2.91 | 2.80 | HHsearch | | IKIEFIGQIELYYDR-------------GNHHEFVSLVKDLARPGEITQ-SQAFDFEFTHVEKPYESYT---GQNVKLRYFLRATISRRL---------------------N-DVVKEMDIVVHTLSTYPELNIKMEVGIEDCLHIEFEYNKSKYLKDVIVGKIYFL-SVE----IKIKHMEIDIIKRETTGTGPNVYHEND- |
9 | 4ll1A | 0.11 | 0.09 | 3.21 | 1.20 | PROSPECTOR2 | | VRILACGVAKVLWMQGS--------QQCKQTSEYLRYEDTENEMVIMRPGNYEYKFGFELPQPLGTSF---KGKYGSVDYWVKAFLDRPSQP---------------------TQETKKNFEVVPDLMAPVSAKKEKKVPDGRVSVSARIDRKGFEGDEISIHADFENTSSRI-----VVPKAAIVARHTYLANGQTKVLTQK |
10 | 4ll1A | 0.10 | 0.08 | 2.90 | 1.54 | SAM | | -RILACGVAKVLWMQGSQ-------QCKQTSEYLRYEDTLLLEMVIMRPGNYEYKFGFELPQPLGTSFK---GKYGSVDYWVKAFLDRPS---------------------QPTQETKKNFEVV-DLMAP-KEKKVSFIPDGRVSVSARIDRKGFEGDEISIHADFENTSSR----IVVP-KAAIVARHTYLANG-------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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