Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140
| | | | | | | |
| Seq | LTPRLKAIASYVKEGSTVADIGTDHGYVPVFLIENKIASSAIAADVNEGPLNNAEAYIEEKELSDKIETRLGDGLKALKPNEVDTVIIAGMGGTLIANILKESKEVADKIDRFILQPMVASDELRKYLYNNNYKIVDEKLIREGKRIYEII |
1 | 3gnlA1 | 0.40 | 0.40 | 11.72 | 1.64 | SPARKS-K | | LSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKDAIDTIVIAG-GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIV |
2 | 3gnlA1 | 0.37 | 0.37 | 11.01 | 2.74 | FFAS-3D | | LSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGGGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIV |
3 | 6q56A | 0.40 | 0.40 | 11.73 | 5.59 | HHpred | | LSKRLQTVAEYIPNGAVMADIGSDHAYLPSYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKSYEVL |
4 | 3gnlA1 | 0.40 | 0.40 | 11.72 | 2.11 | MUSTER | | LSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKAIDTIVIAG-GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIV |
5 | 3kr9A | 0.40 | 0.40 | 11.91 | 1.65 | CNFpred | | ISKRLELVASFVSQGAILLDVGSDHAYLPIELVERGQIKSAIAGEVVEGPYQSAVKNVEAHGLKEKIQVRLANGLAAFETDQVSVITIAGMGGRLIARILEEGLGKLANVERLILQPNNREDDLRIWLQDHGFQIVAESILEEAGKFYEIL |
6 | 6q56A | 0.40 | 0.40 | 11.73 | 0.45 | HHsearch-2 | | LSKRLQTVAEYIPNGAVMADIGSDHAYLPSYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKSYEVL |
7 | 3gnlA1 | 0.37 | 0.37 | 11.01 | 2.01 | Neff-PPAS | | LSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGGGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIV |
8 | 6q56A | 0.40 | 0.40 | 11.72 | 0.71 | HHsearch | | LSKRLQTVAEYIPNGAVMADIGSDHAYLPSYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKSYEV- |
9 | 3gnlA1 | 0.40 | 0.40 | 11.72 | 1.60 | PROSPECTOR2 | | LSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTASFAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKDAIDTIVIAG-GGTLIRTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIV |
10 | 6q56A | 0.39 | 0.39 | 11.54 | 1.82 | SAM | | -SKRLQTVAEYIPNGAVMADIGSDHAYLPSYAVLNHKASGAIAGEITDGPFLSAKRQVEKSGLNSHISVRQGDGLEVIKKGEADAITIAGMGGALIAHILEAGKDKLTGKERLILQPNIHAVHIREWLYKERYALIDEVILEEDGKSYEVL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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