Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | PLSGEIHIDGTYVHSAPRPKNKKSERVDRRLKQNANPNKRAVLVMRERYAKQETLSNPQLVGAKRTITFPVLSENTETVKKLAHTYIEPNSRIHTDENSAYDELIVDYDLQRVNHQKEYRSDEGITNNLAESYFSRFKRMYYGQVHKMSNIYLDNYANEIAYRED |
1 | 3kkrA | 0.13 | 0.10 | 3.38 | 1.10 | Neff-PPAS | | --SHLWQMDNTHW------------------------NKTIIWVAVETN-------------SGLVEAQVIPEETALQVALCILQLIQRYTHLHSDNGPCFTAHRIENLCKYLGITKTTGIPYNQSQGVVERAHRDLKDRLAAYQGDCVEAALSLALVSLNKKRG |
2 | 5cr4A | 0.07 | 0.07 | 2.93 | 1.19 | SP3 | | FWRNVLWSDETKIELFGHNDHRYVKPKNTIPTVKHGGGSIMLWGCFAAGGTGALHKIDGIMDAVQYVDIL-----KQHLKTSVRKLLGRKWVFQHDNDPKHTSKVVAKWLKDNKVKVLEWPSQSPDLNPIENLWAELKKRVRARRPTIHPNYCGKLVEGYPKRLT |
3 | 1c0mC1 | 0.12 | 0.09 | 3.22 | 0.94 | SPARKS-K | | GPLQIWQTDFTLE--------------------PRMAPRSWLAVTVDTAS-------------SAIVVTQHGRVTSVAVQHHWATAIRPK-AIKTDNGSCFTEWLARWGIAHTTGIPG----NSQGQAMVERANRLLKDRIRVLAKRIPTSKQGELLAKAMYALN |
4 | 1bl3C | 0.13 | 0.10 | 3.35 | 0.83 | FFAS-3D | | SP-GIWQLDCTHLEGK------------------------VILVAVHV-------------ASGYIEAEVIPAETGQETAYFLLKLAWPVKTVHTDNGSNFTSCWWAGIKQEFGIPYNPQSQG-----VIESMNKELKKIIGQVRDQAEKTAVQMAVFIHNHK-- |
5 | 3hotA | 0.10 | 0.08 | 3.16 | 0.37 | HHpred | | FLHRIVTGDEKWIFFVNPKRKKSYDPATSTARPNRFGKKTMLCVWWDQS---------G-----VIYYELLETVNAARYQQQLINKREHRVIFLHDNAPSHTARADTLNWEVLPH-----AAYSPDLAPSDHLFASMGHALAEQ-RFDSYESVKKWLDEWFAA-- |
6 | 4mq3A | 0.14 | 0.10 | 3.52 | 1.00 | MUSTER | | --MGIWQMDCTHFDG------------------------KIILVGIHVESGY-------------IWAQIISQETADCTVKAVLQLLSNVTELQTDNGPNFQKMEGVLNYMGVKH--KFGIPGNPQSQLVENVNHTLKVWIQKFLPETTS--LDNALSLAVHSLN |
7 | 1cz9A | 0.09 | 0.07 | 2.51 | 0.92 | CNFpred | | ---QIWQTNFTLEPRM---------------------PRSWLAVTVDTA-------------SSAIVVTQHGRVTSVAAQHHWATAIARPKAIKTDNGSCFTSK--GIAHTTGIP--------SQGQAMVERANRLLKDKIRVLAE-IPTSKQGELLAKAMYALN |
8 | 3jcaA | 0.14 | 0.10 | 3.54 | 0.96 | HHsearch-2 | | KPRVLWQMDVTHVSE--------------------FGKLKYVHVTVDTYSH-------------FTFATARTGEATKDVLQHLAQSFAIPQKIKTDNAPAYVSRLWKISHV-------TGIPYNPQGQIVERTHQNIKAQLNKLQKAGKYYTPHHLLAHALFVLN |
9 | 4mq3A | 0.13 | 0.10 | 3.34 | 1.10 | Neff-PPAS | | ---GIWQMDCTHFD------------------------GKIILVGIHVE-------------SGYIWAQIISQETADCTVKAVLQLLSAHTELQTDKNQKMEGVLNYMGVKHKFGIPGNPQ----SQALVENVNHTLKVWIQKFLPET--TSLDNALSLAVHSLN |
10 | 4mq3A | 0.14 | 0.10 | 3.32 | 0.73 | HHsearch | | --MGIWQMDCTHF------------------------DGKIILVGIHVESG-------------YIWAQIISQETADCTVKAVLQLLSANTELQTDNGPNFKNVLMGVKHKFG-------IPGNPQQALVENVNHTLKVWIQKFLP--ETTSLDNALSLAVHSL- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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