Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40
| | |
| Seq | QPPTGYPTEKKKMKKCWPRSKPKGDRGFIEGCLFALCCCWICDICF |
1 | 2jmsA | 0.13 | 0.11 | 3.78 | 1.04 | SPARKS-K | | -------TDPEEHFDPNTNCDYTNSQDAWDYCCGEICCNDCTGACR |
2 | 2lzlA | 0.15 | 0.13 | 4.41 | 1.62 | MUSTER | | -----LPAEEELVEADEAGSVYAGILSYGVGFFLFILVVAAVTLCR |
3 | 2nsvA | 0.13 | 0.11 | 3.76 | 1.06 | Neff-PPAS | | NPEDWFTPDTCAY--------GDSNTAWTTCTTPGQTCYTCCSSCF |
4 | 2nsvA | 0.11 | 0.11 | 3.89 | 1.00 | SPARKS-K | | -NPEDWFTPDTAYGDSTCTTPGQTCYTCCSSCFVGEQACQMSAQC- |
5 | 6ftg3 | 0.11 | 0.11 | 3.89 | 0.36 | FFAS-3D | | EPPSVGSMTDEHGHQRPVAFLAYRVNGLASSFLFTMGGLGFIIL-- |
6 | 5lnkq | 0.23 | 0.20 | 6.13 | 0.20 | HHpred | | PPVGGYGPIDYKRN--LPRRGLSG-YSMFAVGIGALLFGYWS---- |
7 | 2nsvA | 0.09 | 0.09 | 3.33 | 1.46 | MUSTER | | NPEDWFTPDTCAYGDSNTTTPGQTCYTCCSSCVVGEQACQMSAQC- |
8 | 6c70A | 0.26 | 0.11 | 3.35 | 0.49 | CNFpred | | ---------------------------AVSNSLDVLFCSWLLFACE |
9 | 5lnkq | 0.21 | 0.20 | 6.20 | 0.51 | HHsearch-2 | | PPVGGYGPIDYKRN--LPRRGLSG-YSMFAVGIGALLFGY-WSMMR |
10 | 1zvoC2 | 0.08 | 0.04 | 1.74 | 1.03 | Neff-PPAS | | GRGGEEKKKEKEKEEQEERETKTPEC-------------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|