Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | LVTHCSPTLADMKTGNLFNCKCDSECEVKEQIEQWNKVLNPKGVSMTLLRTMKDRALVYVYRPKRLELDMKREEAQCFLRDQGYQNHCTDECIKHLATRLCSCEEFPHEIGLFLGYPIEDVKGFIENKGKNCKCVGYWKVYFDEQEAQRTFEKYRRCTKIYRRKLQEGRSVERLT |
1 | 5cwcA | 0.14 | 0.13 | 4.46 | 0.74 | SPARKS-K | | ELRERLVKICVENAKRKGDDTEEAREAAREAFELVREAAERAGID----------------SSEVLELAIRLKECVENAQREGYDCRAAAEAFKRVAEAAKRAGITSSEVLLAIRLIKECVENAQREGYDACRAAAAFKVAEAAKRAETLKRAIEEIRKRVEEAQREGNDISEAC |
2 | 3c1dB | 0.13 | 0.09 | 2.99 | 0.63 | FFAS-3D | | -------------------------PAYARLLDRAVRILAVRD-----------------HSEQELRRKLAAERVIAWCHEHGY--LDDSRFVARFIASRSRKGYGPARIRQELGISREATEKAMREADID-----------WAALARDQATRKFSEKVKIQRFLLRGYLMEDI- |
3 | 4r29A | 0.09 | 0.06 | 2.17 | 0.41 | HHpred | | ---SWLTVISGKRPMGQFSVDSLYNPDL-------HALCELPDICCKIFPKENNLYIVVVYRNDRFIELY--NIKRDIMQELNYALPELKAVKSEMIIA--------REMGEIFSYMPGEIDSYMKYIN---------------------------------------------- |
4 | 2l82A | 0.13 | 0.10 | 3.55 | 0.70 | MUSTER | | -------------MSQIFVVFSSD----PEILKEIVREIKRQGVRVVLLYSDQD--------------EKRRRERLEEFEKQGVDVEDKEDFRENIREIWERYPQLDVVVIVTTDDKIKDFIEEAKERGVEVFVVYN----KDDDRRKEAQQEFRS-KEELIEQVRR---FVRKV |
5 | 3cwwA | 0.13 | 0.12 | 4.16 | 0.63 | CNFpred | | FEFFSPFAYVDPLHSNMAYLY---LELLKDSLNEYAYAAELAGLSYDLQNTI-YGMYLSVKGYDKQPILLK--KIIEKMATFEIDEARFEIIKEAYMRSLNNFAEQPHQHAMYY-VTLPRLKAFIPQLLSRLHIEALLHGNITKQAALGIM-------QMVEDTLIEHAHTKPLL |
6 | 4r29A | 0.10 | 0.07 | 2.52 | 0.43 | HHsearch-2 | | PEGSWLTVISGKRPMGQFSVDSLYNPDL-------HALCELPDICCKIFPKEDFLYIVVVYRNDSLGEQRAYNIKRDIMQELNYALPELKAVKSEMII--------AREMGEIFSYMPGEIDSYMKYI--NNKL----------------------------------------- |
7 | 3tlxA1 | 0.12 | 0.10 | 3.64 | 0.64 | Neff-PPAS | | -----------------------STIDLLNELKRRYACLSKPDGRYIFLGAPKSHCYCHLSTGDLLREAAEKELGLKIKNIINEGKLVDDQMVLSLVDEKLKTPQC-KKGFILDGYPAEDLNKLLQKNQTKLDGVFYFNEDDNEDVLKKRLTVFKSETSPLISYYKNKNLLINLD |
8 | 4r29A | 0.09 | 0.06 | 2.37 | 0.55 | HHsearch | | PEGSWLTVISGKRPMGQFSVDSLYNPDL-------HALCELPDICCKIFPKENNLYIVVVYRNDPLGEQRAYNIKRDIMQELNYALPELKAVKSEMIIA--------REMGEIFSYMPGEIDSYMKYINN--KL----------------------------------------- |
9 | 4i2yA2 | 0.11 | 0.08 | 2.90 | 0.75 | SP3 | | --------------------SRRKWNKAGHAVRAIGRLSSPVVATRDQLTEEQIAEF-----KEAFSLFITTKELGTVMRSLGQNPT--EAELQDMINEVDADGD---------GTDFPEFLTMMARKMNDTDS---------EEEIREAFRVFDKGAAELRHVMTDGEKVDEMI |
10 | 1atza | 0.07 | 0.06 | 2.40 | 0.60 | PROSPECTOR2 | | ------------QPLDVILLSSFPASYFDEMKSFAKAFIGPRLTQVSVLQYGSITTIDVPWNVVP-----EKAHLLSLVDVMQREGGQIGDALGFAVRYLTSEMHGARPAVVILVDSVDAAADAARSNR--------VTVFYDAAQLRILAGPAGDSNEDLPTMVTLGNSFLHKL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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