Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | QTILKGVLIAYVITGVFLLILALLLYKCNLSEQIINIGIIVAYVLSVFVSGFYMGKKMKNKRYLWGLLAGTVYFVLLFAVSLIVNREFTGVQGGFLTTMLLCLGGGMLGGMVS |
1 | 3jbrE | 0.12 | 0.12 | 4.35 | 1.19 | SPARKS-K | | SPTEAPKVRVTLFCILVGIVLAMTAVVSDHEYSISAAAISVFSLGFLIMGTICALMAFRKKRDYLLRPASMFYVFAGLCLFVSLEVMRQSVKRMACAAFVLLFLGGISLLLFS |
2 | 2ksfA | 0.18 | 0.16 | 5.19 | 1.03 | MUSTER | | MVQIQGSVVAAALSAVITLIAMQWLMAFDAAN------LVMLYLLGVVVVALFYGRWP-------SVVATVINVVSFDLFFIAPRGTLAVSDVQYLLTFAVMLTVGLVIGNLT |
3 | 4hzuS | 0.08 | 0.08 | 3.14 | 1.16 | Neff-PPAS | | -IYTSAILYGRRMGLLVGGASGFLIDILTGYPVWCLFSLVIHGTQGLVVGWLLPRHHKGIRSMLLPLLVGSLVMVIGYCLATTLLFGWPAGLASIFGNVVQVGFGAGVTLSIV |
4 | 2vpyC2 | 0.11 | 0.11 | 3.83 | 1.17 | SPARKS-K | | RPLWNGLMAGLFPLTALVLALGLAALLSPWALFPLRVLAGASLLLALLY-PLTLPPEARGHLLEEAGF---WYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQG |
5 | 3wdoA2 | 0.14 | 0.13 | 4.57 | 0.96 | FFAS-3D | | -KLNFGIMCLHMLLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFVVAEIVLWNAQTQFWQLVFVAFNLMEALLPSLISKESPAGYKGTAMGVYSQFLGVAIGGSLGGWI- |
6 | 6iu3A | 0.15 | 0.12 | 3.88 | 0.27 | HHpred | | RALQSA-FTIAIAY-VLGGLVPLIPYMFIPVARKAVVASVILTLMALLIFGYAKGYFTDNKPFKSALLIGAIASAAAFGMAKAVQSENLY----------------------- |
7 | 2vpyC2 | 0.12 | 0.12 | 4.07 | 1.00 | MUSTER | | RPLWNGLMAGLFPLTALVLALGLAALL---KSPWALFPLRVLAGASLLLALLYPLTLPPE-ARGHLLEEAGFWYGLFLLLGLGTFWQERLAPWAGLLAAAGLRALLVLAGQWQ |
8 | 3rkoB | 0.12 | 0.12 | 4.10 | 0.97 | CNFpred | | PTPVSALIHAATMVTAGVYLIARTHGLFLMT-PEVLHLVGIVGAVTLLLAGFAALVQTDIKRVLAYSTMSQIGYMFLALGVQAWDAAIFHLMTHAFFKALLFLASGSVILACH |
9 | 6iu3A | 0.17 | 0.14 | 4.64 | 0.72 | HHsearch-2 | | RDIIIGVSDGLTVPFALAAGLSLIPYMFIPVARKAVVASVILTLMALLIFGYAKGYFTDNKPFKSALLIGAIASAAAFGMAKAVQSENLY--FQ------------------- |
10 | 5d0yA | 0.13 | 0.13 | 4.58 | 1.15 | Neff-PPAS | | -SVMLGYLFGPWWGFAGGALSDLVSSAIFGNLGGFFIGFTLTAALESMIYGFFLYKPIQIWRVIASVICVTVICYIGLNTLWVSMLGGTNFMVALSSRILKEMITPWIHMVVV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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