>PF12603 (243 residues) DELCFRFLVARAVHLEMTTKMIIPEYDDEDEDKRSREVKAAFHSVQPDWNVTEANFAPFS RRMFSNFAQMEPDKEYLAHIILDSLKQAQADLDGNHYLNESLTEQARLDRNREESLNMVK DFERDFNNAAQRSAWSHKSTVPFPGVIPKVSGDTTSLSRLVELPVITGGSDATIRAWRSA YGSVSNGTVERCDEDVERERRAALCSLTVEELEESKALRMKYHRCKIDNGMMDKLDLAMQ GVE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | DELCFRFLVARAVHLEMTTKMIIPEYDDEDEDKRSREVKAAFHSVQPDWNVTEANFAPFSRRMFSNFAQMEPDKEYLAHIILDSLKQAQADLDGNHYLNESLTEQARLDRNREESLNMVKDFERDFNNAAQRSAWSHKSTVPFPGVIPKVSGDTTSLSRLVELPVITGGSDATIRAWRSAYGSVSNGTVERCDEDVERERRAALCSLTVEELEESKALRMKYHRCKIDNGMMDKLDLAMQGVE | |||||||||||||||||||
1 | 5cwcA | 0.11 | 0.08 | 2.96 | 0.65 | SPARKS-K | EKEELRERLVKICVENAKRKGD-------DTEEAREAAREAFELVRERAGIDSSEVLELAKECVENAQREGYDISEACRAAAEAFKRVAEAAKRAGITS---------SEVLELAIRLIKECVENAQREGYD---------------------------------ISEACRAAAEAFKRVAEAAKRAGIKRAIEEIRKRVEEAQREGNEACRQAAEEFRKKAEELKRR--------------- | |||||||||||||
2 | 4nn1A | 0.09 | 0.07 | 2.49 | 0.89 | FFAS-3D | --LTAHARIREAAIEQFGRHGFGVG------------LRAIAEAAGVS-----------AALVIHHF----GSKEGLRKACDDFVAEEIRSSKAAALKSNDPTTWLAQMAEIESYAPLMAYLVRSMQSGGELAKM---------------------------------LWQKMIDNAEEYLDEGVRAGTVKPSRDPRARARFLAHENPTDLRAALRDYAHDM--------VLPSLEVYTEGL- | |||||||||||||
3 | 1vt4I3 | 0.11 | 0.06 | 2.25 | 0.37 | HHpred | --------------------------------ALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGH----------HLKNIE------------------HPERMTLFRMVFL--DFRFLEQKIRHDSTAWNASGSILNLKFYK----------------PYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED-EAIFEEAHKQVQ---------------------- | |||||||||||||
4 | 5cwmA | 0.14 | 0.12 | 4.20 | 0.75 | MUSTER | EDELKRVEKLVKEAEELLRQ-AKEKGSEEDLEKALRTAEEAARE---------------AKKVLEQAEK-EGDPEVALRAVELVVRVAELLLRIAK-ESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVALRAVELVVRVAIAKESGSEEALERALRVAE------EAARLAKRVLELAEKQGDPEVARRAVELVKRVAESGSEEAKERAERVREEAREL-----QERVKELRER--- | |||||||||||||
5 | 4gmxC | 0.08 | 0.07 | 2.72 | 0.60 | CNFpred | GLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNNVPDARDAE--VLNCMTTVVEKVGHM--IPQGVILILQSVFECTLDMINKDFT-----EYPEHRVEFYKLLKVINEKSFAAFLEL---PPAAFKLFVDAICWAFKHN-----NRDVE---------VNGLQIALDLVKNIERMANEFHKNYFFIFVSETFFVLTDSDHKS---------------GFSKQALLLMKLIS | |||||||||||||
6 | 1vt4I | 0.12 | 0.12 | 4.21 | 0.97 | HHsearch-2 | LKLTTRFKQVTDFLSAATTTHISLDHH--SMTLTPDEVKSLLLKYPQDLPREVLTNPRIIAESIDNWKH--VNCDKLTTIIESSLNVAYRKMFDSVFPPSAHIPTILLSLIWFDVISDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELLENEYALHRKTDLIPPYLDQYFYSHILEQKIRHDSTWNASGSILNTLQQLKFYCDNDPKIEENLICSKYTDLLRIALMADFEEAHKQVQRGGG | |||||||||||||
7 | 5nnvA | 0.08 | 0.07 | 2.81 | 1.07 | Neff-PPAS | LAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEELEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL------------------ | |||||||||||||
8 | 1vt4I3 | 0.12 | 0.08 | 2.77 | 0.72 | HHsearch | -----EY-------------------------ALHRSIVDH-YNIPKTFDSDDLIPPYLDQYFYSHIGH------------------HLKNIE----------HPERMTLFRMVF--LDFRFLEQKIRHDSTAWNASGSILNT-------------LQQLKYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAED-EAIFEEAHKQVQ--RGGGGGGGGG-----GGGG- | |||||||||||||
9 | 5cwbA | 0.12 | 0.10 | 3.47 | 0.61 | SP3 | DECEEKARRVAEKVERLKRSGTSEDEIAEEVAREISEVIRTLKESGSSYEVICECVARIVAEIVEALKRSGTSEDEIAEIVARVISEVIRTLKESGSSYE--VICECVARIVAEIVEALKRSEDEIAEIVARVISE---------VIRTLKESGSSYEVI---------KECVQRIVEEIVEALKRSGTS------EDEINEIVRRVKSEVERTLKESGS----------------------- | |||||||||||||
10 | 4m0mA2 | 0.09 | 0.09 | 3.40 | 0.89 | PROSPECTOR2 | DRLSYLQHSLTSIANYYHYHC---DEKSSTNESVKNLLLERVKESRTKPDSEAIKHKNEKGFLWQQINHISPNARQYCEQVKAALREHLEHNQDNIVNDSSKDSQQKYREIRREVIELNDNQLTRSHFQKAYFEGDTQKTLNLESLS-------QTLNQLSKAHYGETSTDKITQRWNSVKEVLNFFNIPLPKLHSEVKEQIADGNDVNAITRELGKAREDLIEHYKKTGELDKIINKSEELK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |