>PF12460 (438 residues) PAFVATLPDFDDGTNSNYLPTLESLAQISVEKDIFETLVRRLLSKFNILLQKEQPGSVAY PRAILVTILYVMSQRKMDQDPNLELYYDKIVVSLCRNAAISASGKANNNILNDATVLDTL GRLCNLIVRALPRNKQDEVAENVYTLYSSADDFPSVPFSQSASDDQQRTMIISTYLLAGL PTDCASLPYTSPNMSALLFDVVKRSTTECAPATHLALLRHLSLLVNKFLPKSELSLATEL FDTLLPSNAEGKTLSPESIKTLFWLSKALVLRLAPKTSDHLTSLLSLLSSPDKVTSTTAA HGFAILLRDDDVLSTANGANIRLLSKQRVFTTLVPLISSKIREVNVAGSDSPTPEHIKPA HLTALSGILSTIPPSLVMPELPTLLPLLLQSLDLQTSESQSVRIATLETLAVIIRDNGVG VIEECGHIQSLVTRLLKT |
|
Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
Seq | PAFVATLPDFDDGTNSNYLPTLESLAQISVEKDIFETLVRRLLSKFNILLQKEQPGSVAYPRAILVTILYVMSQRKMDQDPNLELYYDKIVVSLCRNAAISASGKANNNILNDATVLDTLGRLCNLIVRALPRNKQDEVAENVYTLYSSADDFPSVPFSQSASDDQQRTMIISTYLLAGLPTDCASLPYTSPNMSALLFDVVKRSTTECAPATHLALLRHLSLLVNKFLPKSELSLATELFDTLLPSNAEGKTLSPESIKTLFWLSKALVLRLAPKTSDHLTSLLSLLSSPDKVTSTTAAHGFAILLRDDDVLSTANGANIRLLSKQRVFTTLVPLISSKIREVNVAGSDSPTPEHIKPAHLTALSGILSTIPPSLVMPELPTLLPLLLQSLDLQTSESQSVRIATLETLAVIIRDNGVGVIEECGHIQSLVTRLLKT | |||||||||||||||||||
1 | 2ynsA | 0.12 | 0.10 | 3.50 | 1.23 | SPARKS-K | PAMIGGVYS---DDNNLQLEATTQFRKLLSIEEVIQSVVPRFVQFL------TREDFPQLQFEAAWALTNIA--------SGTSENTKVVIDGAVPIFVKLLGSS-------SDDVREQAVWALGNVAGD-SPKCRDLVLANALLPLLAQ-------LNEHTKLSMLRNATWTLSNFCR-----GKPQPSFEQTRPALPALARLI-HSNDEEVLTDACWALSYLS--DGTNDKIQAVIEAVCPRLVELLLHP--SPSVLIPALRTVGNIVQTQCIIDHQALPCLLSLLTQLKKSIKKEACWTISNITAGNK-----------DQIQAVINAGIIGPLVNLLQTA---------EFDIKKEAAWAISNATSGGSHDQIKYLVSECIKPLCDLLICPD---IRIVTVCLEGLENILKVGELEKIENLQSIYEKAVKILEA | |||||||||||||
2 | 4uaeA | 0.12 | 0.11 | 3.68 | 1.59 | FFAS-3D | EAIVQNA---SSDNQGIQLSAVQAARKLLSSDDLIKSILPILVHCL------ERDDNPSLQFEAAWALTNIASGT--------SEQTQAVVQSNVPLFLRLLHSP-------HQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLS-------FISPSIPITFLRNVTWVMVNLCRHKDP-----PPPMETIQEILPALCVLIHHTDVNILVDTVWALSYLTD--AGNEQIQMVIDSVPHLVP---LLSHQEVKVQTAALRAVGNIVTGTDEQTQVVLSHFPALLTHPKEKINKEAVWFLSNITAGNQ------------QQVQAVIDALVPMIIHLLDK---------GDFGTQKEAAWAISNLTISGRKDQVAYLIQQVIPPFCNLLT---VKDAQVVQVVLDGLSNILKMAEDEAETIGNLIEEGLEKIEQ- | |||||||||||||
3 | 1u6gC | 0.12 | 0.10 | 3.58 | 1.07 | HHpred | NICLKYLTY--DMSWKVRRAAAKCLDAVVSTHEMLPEFYKTVSPALISRFKER---EENVKADVFHAYLSLLKQTRP-VGETPLTMLQSQVPNIVKALHKQMKE-------KSVKTRQCCFNMLTELVNVLPGALIPVLVPGIIFSLNDKSS---------SSNLKIDALSCLYVILCNHSP---QVFHP--HVQALVPPVVAC-VGDPFYKITSEALLVTQQLVKVIRPLDDATPYIKDLFKRLKAADIDQEVKERAISCMGQIICNLGDNLGS-DPNTLQIFLERLKNEITRL--TTVKALTLIAGSPLK------IDL-----RPVLGEGVPILASFLRKN---------QRALKLGTLSALDILIKNYSDSLTAAMIDAVLDELPPLISESDM---HVSQMAISFLTTLAKVYP-SSL--SKISGSILNELIGL | |||||||||||||
4 | 4uaeA | 0.14 | 0.12 | 4.00 | 1.21 | MUSTER | EAIVQNA---SSDNQGIQLSAVQAARKLLSSPPIDDLIKSGILPILVHCLERDD--NPSLQFEAAWALTNIASG----TSEQTQAVVQSAVPLFLRLL------------SPHQNVCEQAVWALGNIIGD-GPQCRDYVISLVVKPLLSF-------ISPSIPITFLRNVTWVMVNLCR----HKDPPPPMETIQEILPALCVLIH-HTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHEVKVQTAALRAVGNIVTGTDEQTQVVLNCALSHFPALLTHPKEKINKEAVWFLSNITAGNQ-------------QVQAVIDALVPMIIHLLDK---------GDFGTQKEAAWAISNLTISGRKDQVAYLIQQVIPPFCNLLTV---KDAQVVQVVLDGLSNILKMAEGNLIEECG----GLEKIEQL | |||||||||||||
5 | 5vchA | 0.14 | 0.12 | 4.15 | 1.55 | CNFpred | PSVVQVLDATIREDTTNTKLIFNCLNDFLLDSQLTGNTIADLVKLALQIAVNS--VDEDIRVFAVQFVTSALVYRK------SKINQAKLGPEITLAALKVASEEIDDELTN-NTPALTALRLISNASGELSPSVGVPIIEHLPTMLSSS-----------NPFERRSILLAISVLVTGSPDYT------LSQFDKIIPATVTGLK-DSEAVVQLAALKCIVQLSTNLQVARYHEQYLPLVIDIIDSA-----KHVVIYKYATLALDGLLEFIAKYLDPLMNKLFQMLETQQPKLRAAIVSAIGSCAFA------------AGSGFVPYFKTSVQYLQQFIQNVSQIEGLSEDDIELKALTFENISTMGRAVKSAAFAEYAEPLVNAAYEAIKT---DSARLRESGYAFIANMAKVYGKDFA---PFLQTIIPEIFKT | |||||||||||||
6 | 3ea5B | 0.13 | 0.11 | 3.91 | 0.69 | HHsearch-2 | IAIVQGAQSTET-SKAVRLAALNALADSLIFKNNMEGERNYLMQVVCEATQAE---DIEVQAAAFGCLCKIMSKYYT----FMKPYMEQ---ALYALTIATMKS-------PNDKVASMTVEFWSTICEEESYNFALSSIKDVVPNLLRQNEDPDDDWNVADNWRNREAA---VMAFGSIMD---GPDKVTYYVHQALPSILNL-MNDQSLQVKETTAWCIGRIADSVAESQHLPGVVQACLIGLQ---DHPKVATNCSWTIINLVEQLAEPIYN-FPALVDGLIGAANRFNARA--SAFSALTTMVEYATTVSVDENQKSPS-SVEPVADMLMGLFFRLLEKKD--------SAFIEDDVFYAISALAASLG-KGFEKYLETFSPYLLKALNQVDS---PVSITAVGFIADISNSLE-EDF--RRYSDAMMNVLAQM | |||||||||||||
7 | 4uaeA | 0.12 | 0.10 | 3.65 | 1.59 | Neff-PPAS | EAIVQNASSDN---QGIQLSAVQAARKLLSSPPIDDLIKSGILPILVHCLERDD--NPSLQFEAAWALTNIASGTSEQTQAVVQSNAVPLFLRLLHS--------------PHQNVCEQAVWALGNIIGDGPQCRDYVISLGVVKPLLSF-------ISPSIPITFLRNVTWVMVNLCRHKD-----PPPPMETIQEILPALCVLIHHTDVNILVDTVWALSYLTDAGNEQIQMVIDSGIVPHLVPLLSHEVKVQTAALRAVGNIVTGTDEQTQVVLNDALSHFPALLTHPKEKINKEAVWFLSNITAGN------------QQQVQAVIDALVPMIIHLLDKG---------DFGTQKEAAWAISNLTISGRKDQVAYLIQQVIPPFCNLLTV---KDAQVVQVVLDGLSNILKMAEDEAETIGNLIEECLEKIEQL | |||||||||||||
8 | 1u6gC1 | 0.12 | 0.02 | 0.73 | 1.01 | HHsearch | -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FVDLIEHLLSELSKND--------SMSTTRTYIQCIAAISRQAGHRI-GEYLEKIIPLVVKFCNVDDD---ELREYCIQAFESFVRRCP-K------------------ | |||||||||||||
9 | 1b3ua | 0.10 | 0.09 | 3.50 | 1.40 | PROSPECTOR2 | AALIDELRNEDVQLRLNSIKKLSTIALALGVERTRSELLPFLTDALAEQLGTFTTGGPEYVHCLLPPLESLATVEETVHEHSPSDLEAHFVPLVKRGLFSVCYPRVSSAVKDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAAQLLPQEDLEALVMPTLRQAAEDKSWRVAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHSALASVIMGLSPILQLKDEQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLA---GQLGVEFFDENSLCMAREAATSNLKKLVEKFGKEWAHAMSGDPNYLHRMTTLFCINVLSEVCGQDITT---KHMLPTVLRMAGDPV---ANVRFNVAKSLQKIGPILDNSTLQ--SEVKPILEKLTQD | |||||||||||||
10 | 1u6gC | 0.13 | 0.11 | 3.64 | 0.75 | SAM | QIFLERLKN-----EITRLTTVKALTLIAGSPLDLRPVLGEGVPILASFLRKN---QRALKLGTLSALDILIKNYS---DSLTAAMIDAVLDELPPLI-----------SESDMHVSQMAISFLTTLAKVYPSKISGSILNELIGLVRSPLL---------QGGALSAMLDFFQALVVTGTN---N---L--GYMDLLRMLTGPVYSQTHKQSYYSIAKCVAALTRACPKEGP--AVVGQFIQDVKNSRSTDSIRLLALLSLGEVGHHIDLSGQL-E---KSVILEAFSSEEVKS--AASYALGSISVGNP-------------------ETLLPRLKGYLISG---------SSYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDL---NVRRVALVTFNSAAHNKP-SLI--RDLLDTVLPHL--- | |||||||||||||
|
|
References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |