Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | RLREIPYNYTSFSDREIVIRLLGADAWDVLNTLRGERKTGRSARMLFEVLGDIWVVRRNPYLEDDLLDNPKRRQMLVEALRHRLHEIEVRRQGNELVGQLLEAAARAVREFE |
1 | 5cwqA2 | 0.13 | 0.12 | 4.04 | 0.80 | SPARKS-K | | ----------SEEAERASEKAQREEARKVSEEAREQGDDEVLALALIAIALAVLALAEVACNKEEAERAYEDARRVEEEARKVKESAEEQGDSERLAEEAEQLAREARRHVQ |
2 | 4nmnA1 | 0.20 | 0.19 | 5.98 | 0.74 | FFAS-3D | | -----PCDESA--ERAVLGSMLPENIPLVLEYLKEEDFCIDEHKLLFRVLTNLWSEYGNKWL-EELYEEIVKQRSAQRAIIQLGIELIHKGKENKDFHTLIEEAQSRIFSI- |
3 | 1vt4I3 | 0.17 | 0.15 | 5.02 | 0.32 | HHpred | | -----EYAHRSIVDHYNIPKTFDSYFYSHIHHLKNEHPE--RMTLFRMVFLDFSTQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICSTDLLRDEAIFEEAHKQV- |
4 | 5cwpA1 | 0.25 | 0.22 | 6.92 | 0.72 | MUSTER | | ----------MSSDEEEARELI-ERAKEAAERAQEAERTGELARELKRLAQEAEEVKRDPS-SSDVNEALKLIVEAIEAAVRALEAAERTGDPEELARELVRLAVEAAEEVQ |
5 | 5cwiA | 0.06 | 0.05 | 2.33 | 0.55 | CNFpred | | -------------CIKAASEAAESKAAELAQRHPDSQAARDAIKLASQAAEAVKLACELAQEHADIAKLCIKAASEAAEAASKAAELAQRHPDSQAARDAIKLASQAAEAVK |
6 | 1vt4I3 | 0.17 | 0.16 | 5.26 | 0.67 | HHsearch-2 | | -----EYAHRSIVDHYNIPKTFDSYFYSHIHHLKIEHPE--RMTLFFLDFRFLSLQQLKFYKPYI-CDNDPKYERLVNAILDFLPKIEENLICS-KYTDLLAIFEEAHKQVQ |
7 | 5cwmA1 | 0.13 | 0.12 | 4.02 | 0.61 | Neff-PPAS | | -------------DPEDELKRVEKLVKEAEELLRQAKEKGEDLEKALRTAEEAAREAKKVLEQAEKEGDPEVALRAVELVVRVAELLLRIAKESERALRVAEEAARLAKRVL |
8 | 4c53A | 0.32 | 0.14 | 4.30 | 0.54 | HHsearch | | EVLKVPYNYTRF--------------W---------------------SLPRCWLVSNGSYLNESDFRNEWILES-----DH-------------LIAEMLSK--------- |
9 | 5cwpA2 | 0.20 | 0.18 | 5.71 | 0.56 | SP3 | | ----------SSSDVNEALKLI-VEAIEAAVRALEAERTGLARELVRLAVEAAEEVQRNPS-SEEVNEALKKIVKAIQEAVESLREAEES-GDPEKREKARERVREAVERAE |
10 | 3crjA | 0.13 | 0.13 | 4.62 | 0.53 | PROSPECTOR2 | | RTFEHGYADLTIQRDDLLAAFLDYLLERFVDSIHDVETTDPEARLNLLLDELLVKPQENPDLSVALLEQAPYKEAFSDRFRQNDEYVRAVLDDTEELETARQTASEYADALQ |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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