Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180
| | | | | | | | | |
| Seq | FSSNNSTSDLQNVAVRAGYMGICVTGIPSTYSEKSTLCYSRKNISNAPLYDDLDVKVFNIRSSNSSSTQATQLNILQLAEDSSVRLIHPYVLMAVIVLTIVMFCCTLFATIPKLPGKTYLNRFLLALCPVLTLTWGIGAMWTHVAIHASSNYIPHASMGILKVKMGYKASAMAWAAFAFLNVNCLILWALYFR |
1 | 5vhxE | 0.13 | 0.11 | 3.77 | 0.86 | SPARKS-K | | AVALNLLALLFATTAFLTTYWCQGTQRVPFQLRRFHTCEEGEKCRSF------------IDLAPAS----------------EKGVLWVVSEVLYILLLVVGFSLMCLELLHSSDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH----SWGW-SFCLAWGSFTCCMAASVTTLNSYTK |
2 | 5vhxE | 0.16 | 0.12 | 3.97 | 0.98 | FFAS-3D | | ----TQRVPFQLRRFHTGIWYSCEE--------------------------------GEKCRSFIDLAPASEKGVLWLSVVS---------EVLYILLLVVGFSLMCLELLHSSDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH--SWDYGWSF-CLAWGSFTCCMAASVTTLNSYTK |
3 | 6akfA | 0.18 | 0.13 | 4.40 | 0.27 | HHpred | | -SAFIGSSIITAQITWEGLWMNCVVQS-----TGQMQCKMYDSLLALP----------------------Q---DLQAARA---------LIVVSILLAAFGLLVALVGAVQDETAKAKITIVAGVLFLLAALLTLVAVSWSANTIIRD--FYNPLVPEAQKREM-GAGLYVGWAAAALQLLGGALLAAS--- |
4 | 6akfA | 0.19 | 0.15 | 4.84 | 0.87 | MUSTER | | VSAFIGSSIITAQITWEGLWMNCVV-----QSTGQMQCKMYDSLLALP-------------------------QDLQAARALIVV----SILLAAFGLLVALVGAQATNAVQDETAKAKITIVAGVLFLLAALLTLVAVSWSANTIIRDFYN--PLVPEAQKREMG--GLYVGWAAAALQLLGGALLAAS--- |
5 | 3rkoB | 0.08 | 0.05 | 1.85 | 0.93 | CNFpred | | ---------------------------------------------------------------------------TWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLPEVLHLVGIVGAVTLLLAGFAALVQRVLAYSTMSQIGYMFLALGVQAWD---AAIFHLMTHAFFKALLFLASGSVILACH |
6 | 6akfA | 0.18 | 0.13 | 4.40 | 0.84 | HHsearch-2 | | VSAFIGSSIITAQITWEGLWMNCVVQS-----TGQMQCKMYDSLLA------------------------LPQ-DLQAAR---------ALIVVSILLAAFGLLVALVGAVQDETAKAKITIVAGVLFLLAALLTLVAVSWSANTIIR--DFYNPLVPEAQKREMG-AGLYVGWAAAALQLLGGALLAAS--- |
7 | 5vhxE | 0.14 | 0.11 | 3.69 | 0.95 | Neff-PPAS | | ----TQRVPFQLRRFHTGIWYSCEEG---------EKCRSFIDLAPAS------------------------------EKGVLWLSVVSEVLYILLLVVGFSLMCLELLHSSDG---LKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVSLGPEDWRPH-SWDYG-WSFCLAWGSFTCCMAASVTTLNSYTK |
8 | 6akfA | 0.18 | 0.13 | 4.40 | 0.70 | HHsearch | | VSAFIGSSIITAQITWEGLWMNCVVQS-----TGQMQCKMYDSLLA------------------------LPQ-DLQAAR---------ALIVVSILLAAFGLLVALVGAVQDETAKAKITIVAGVLFLLAALLTLVAVSWSANTIIR--DFYNPLVPEAQKREMG-AGLYVGWAAAALQLLGGALLAAS--- |
9 | 4nqaB | 0.08 | 0.07 | 2.68 | 0.79 | SP3 | | QQQESQSQSQSP-----------VGPQGSSSQGSGEGEGVQLTAAQELMIQQLVLQCNKRSFSDQPKVTPWPLGADPQSRDARQQ---RFAHFTELAIISVQEIVDFAKQVPGFLQLGREDQIALLKASTIEIMLLETARRY------------NHETECITFLKDFTKDDFHRAGLQVEFINPIFEFSRAMR |
10 | 5vhxE | 0.16 | 0.12 | 4.13 | 0.82 | PROSPECTOR2 | | KTSGTQRVPFQLRRFHTGIWYSCEEGE---------KCRSFIDLAPASEKG-----------------------VLWLSVVS-------EVLYILLLVVGFSLMCLELLH---SSDGLKLNAFAAVFTVLSGLLGMVAHMMYTQVFQVTVS-LGPEDWRPHSWDYG-WSFCLAWGSFTCCMAASVTTLNSYTK |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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