Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MIQYGLPILYVIFLWWFSTGAIIYLDGLPQRTYRWSMLGASVLAGIALYALALTAHQETLFGAYVAFTGAIILWGWVEMSFLMGMITGSRRSRCPEGALGWRRFIYAVQAILYHEFALIIAALAIVLVTWGGANMVGLYTFLILWVMRTSTKLNVFLGVRNLNEEWLPDHLRYLESYFRKKPMNLLFPISVTASTIVAVLIVQTAMDPSATTHQVAGATFLAILMILAILEHWFLVLPLPSQALWNWALRSRQP |
1 | 5y78A | 0.09 | 0.08 | 3.17 | 1.09 | SPARKS-K | | TLVHTLKVGFYFFLWYFFNFIFNIANKRTLNMWKYPWVLSTIQLGVGALYCTFLWVLKLIKALIWPSLGHTLGHAATCMSFSLVAI-------------SFTHVVKSAEPVFGAVGSALVLGVALSAATELTFTITAMISNVAFVTRNITSKFTMVDF--KNEKTLIAQNTYALITIIFPPLVSGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIIFGSILVFRTPVTRLNFIGSTIAIIGTMLY |
2 | 3rkoB | 0.11 | 0.09 | 3.39 | 1.29 | CNFpred | | --MLMWATLMLLGGAVGKSAQQTWLADAMGPTPVSALIHAATMVTAGVYLIARTHGLFLMTPEVLHLVGIVGAVTLLLAGFAALVQT-------------DIKRVLAYSTMSQIGYMFLALGVQAWDAA-----IFHLMTHAFFKALLFLASGSVILACQNIFMGGLRKSIPLVYLCF------LVGGAALSAAGFFSKDEILAGAMANGHINLMVAGLVGAFMTSLYTFRMIFIVFH---------------- |
3 | 6gs1A2 | 0.08 | 0.07 | 2.93 | 1.35 | SP3 | | ---QEVARMALGVVAFGIVVIFGKEAFAMKGAARRKMIVAFILMLEAIIFFVLYSQMPTSLNFFAIRNPEQYQALNPFWIIIGSPILA----------AIYNKMGDTLPMPTKFAIGMVMCSGAFLILPLSDAGIVSVSWLVASYGLQSIGELMISGLGLAMVAQLVPQR--------LMGFIMGSWFLTTAGANLIGGYVAGMMAVPNVTDPLMSLEVYGRVFLQIGVATAVIAVL---MLLTAPKLHRMTQD |
4 | 5k7vA | 0.13 | 0.11 | 3.84 | 1.09 | SPARKS-K | | EKAVAEAIEEIARLATAAIQLIEALAKASEEFMARAISAIAELAKKAIEAIYRLADDTFMARAIAAIANLAVTAILAIAALAS-------------NHTTEEFMARAISAIAELAKKAIEAIYRLAD--NHTTDKFMAAAIEAIALLATLAILAIALLASNHTTE-------------------EFMAKAISAIAELAKKAIEAIYRHTSPTYIEKAIEAIEKIARKAIKAIEMLAKNITTEEYKEKAKSAIDE |
5 | 6bugC | 0.12 | 0.11 | 3.88 | 0.90 | FFAS-3D | | ---QILALLFYIVWQIIWVYSYKRYRSQRDNKWVFYLHSFLVVLPLILVKVEPTINGTQLGISYLTFRAVGMIIEMRDLRFMLTFTSGP--------IDRFKRFNEDYQNMLEQAVKYIMLGFLYKFVLAGGIFNLPTLGVMYVYGFDLFFDVSNLMGIKSPINFDKPFISRDMKEFWN----RWHMSLSFWFRDFVFMRLVIVLMRNKVFKNRNTT-SNVAYIINMMVMGFW----HGITWYYIAYGI----- |
6 | 2r6gF | 0.15 | 0.11 | 3.58 | 0.27 | HHpred | | -WTVVFSLITVFLTVAVGMVLACLVQWEALRVYRVLLPYAVPSFISILIFKGLFNQSFGEINMTTARTMLIIVNTWLGYPYMMILCMGLLKAIAMDGAGPFQNFFKITLPLLIKPLTPLMIASFA--FNFN--------NFVLIQLLT--------NGGPDGYTDLLVNYTYRI--AFEGQDFGLAAAIATLIFLLVGALAI---------------------------------------------------- |
7 | 5ezmA1 | 0.11 | 0.11 | 3.81 | 0.85 | MUSTER | | GLGEWQARLAVALSGLLGIGVSMMAARR--WFGARAAAFTGLALLAAPMWSVAAH--FNTLDMTLAGVMSCVLAFMLMGQH------PDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVTRDWGLWRRLHLALGVVVMLVITVPWFYLVSVRN--PEFPNFFFIHWQRRSGSVPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIWAIAIFVFFSILPGYIVPVPA-LGILAGVALDRL-- |
8 | 3rkoC | 0.14 | 0.13 | 4.33 | 1.25 | CNFpred | | LAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHLNLMWILGGVIGVFLAI-----DMFLFFFFWEMMLVPMYFLIALWGHK--------ASDGKTRITAATKFFIYTQASGLVMLIAILALVFVHYWTFNYEELL-VEYLLMLGFFIAFAVKMPVV--LHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLG-KRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIA |
9 | 5tj5A | 0.17 | 0.16 | 5.17 | 0.57 | HHsearch-2 | | PTIVTFPFMFAIMF---GHGFLMTLALNEKEIFDMAFTGRYIILLMGVFSMLGTENALLFSNSYKMKLSI--LMGFIHMTYLANHL-DIIGNFIPGLLFMQGIFGYLSVCIVYKWAGLLNMLINMFLSPGTYPHQAKVQVFLLLMALVLLVKP-LHFKFVIHTIEFCLNCVSHTASYLR------LWALSLAHAQLSSVLWIQIAFG-FRGFVGVFMTWFALTCAVLVLMEAMLHSLRL----HWVESMSK--P |
10 | 5do7A2 | 0.09 | 0.08 | 3.13 | 0.92 | Neff-PPAS | | -KLAVITRLLQNLIMGLFLLFFVLRVRSNQDRVGLLYQFVGATPYTGMLNAVNLFPVLQKWQMMLAYALHVLPFSVVATMIFSSWTLGLHPE--------VARFGYFSAALLAPHLIGEFLTLVLLGIVQNPNIVNSVVALLSIAGVLVGS------GFL-RNIQEMPIPFKIISYFT---------FQKYCSEILVVNEFYGLNFTCAFTIEKTCPGATSRFTMNFLILYSFIPALVILGIVVFKIRDHLIS- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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