>PF12145 (512 residues) DFVQSERFSRRLAYAVCKKLAHLINVMAENHNLNISNPELFQTKQEPKDKPIEKLSPDSD IKPDDITRENPFDSIFSEYMTCSHHRDLVLQLSSIIQVVTLECPTAMVWCGIGETRSSSV LAGSPLDHLPIAPSGLPMPSRCEKSNEEVRKKLLQAEESIKIRSRHAESRWCIDKWQTAA GNASLKILTVLDALDGHCFDRMDTNNSLDTLYQKIFPPLQIVKEAANNNTSGSSNNKESS KSLDYNAEQDESIVKILCEWAVSWQRWGEHRAMAVAWLLDKRQNDVFTTYENEAGNNANS SDDKDSVISGGGPGGGLPIFQHILMKFLDNDAPTLDDHGSPQNKSQFTNLVHLFSELIRH DVFSHDAYMCTLISRGDLLTGSGMSLLDGQSNCPGLVTGPISNKPATASPNVNQSMDEDV MQNDFKAKLEDLDDSNVDDDLDKLLQHIKEDQQNSMDAPDSPKDPDHPAPHASTSNNKSE SSSRHFLYTEHFPLCQDDPISQHDCNQRYILL |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | DFVQSERFSRRLAYAVCKKLAHLINVMAENHNLNISNPELFQTKQEPKDKPIEKLSPDSDIKPDDITRENPFDSIFSEYMTCSHHRDLVLQLSSIIQVVTLECPTAMVWCGIGETRSSSVLAGSPLDHLPIAPSGLPMPSRCEKSNEEVRKKLLQAEESIKIRSRHAESRWCIDKWQTAAGNASLKILTVLDALDGHCFDRMDTNNSLDTLYQKIFPPLQIVKEAANNNTSGSSNNKESSKSLDYNAEQDESIVKILCEWAVSWQRWGEHRAMAVAWLLDKRQNDVFTTYENEAGNNANSSDDKDSVISGGGPGGGLPIFQHILMKFLDNDAPTLDDHGSPQNKSQFTNLVHLFSELIRHDVFSHDAYMCTLISRGDLLTGSGMSLLDGQSNCPGLVTGPISNKPATASPNVNQSMDEDVMQNDFKAKLEDLDDSNVDDDLDKLLQHIKEDQQNSMDAPDSPKDPDHPAPHASTSNNKSESSSRHFLYTEHFPLCQDDPISQHDCNQRYILL | |||||||||||||||||||
1 | 4gmxC | 0.08 | 0.05 | 2.18 | 1.11 | CNFpred | --KDNKAVVASDIMYVVGQYPRFLKAH-----------------------------------------WNFLRTVILKLFEFMHEEGVQDMACDTFIKIVQKCKYHFVIQQP--------ESEPFIQTIIRDIQKTT-----ADLQPQQVHTFYKACGIIISRNRLLSDLLPNMAWDTIV-KIIANIIKTNVAVCTSMGADFY--PQLGHIYYNMLQLYRAVSSMISAQVAAEGLIATKTPKVRGLRTIKKEILKLVETYISKARNLDDVVKVLVEPLLNAVLEDYMNN----------------------VPDARDAEVLNCMTTVVEKVGHMIP----QGVILILQSVFECTLDMINKDFTEYPEHRVEFYKLLKVINEKSFAAFLELPPAA------------------------------------------FKLFVDAICWAFKHNNRDVEVN-----------------------LQIALDLVKNIERMGNVPFANEFHKNYFFIF | |||||||||||||
2 | 1vt4I | 0.13 | 0.11 | 3.70 | 1.36 | HHsearch-2 | DFETGEEMVQKFVEEVLRINYKFLMSPIKTEQR--QPSMMTRMYIEQRDRYNDN---QVFAK-YNVSRLQPYLKLRQALLELRPAKALDVCLSYKVQCKM---DFKIFWLNLKN-------CNSPETVLEMLQQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC----LLVLNVQNAKAWNAFN-------------------------------------------------------LSCKILLTTRLSAATTTHISLDHHSMTLTPLLLKYLD----CRP--------QDLPREV------LTTNPRRLSIIAESIRDGLATVLEP---AEYRKMFDRLSVILLSLIWFDVIKSDVMVVNKLHKYSLVEKQPESTISIPSIYLELKVKLEYNKTFDS-DDLIPPYLDQFYSHHLKNHPERMTLFRMV-FLDRFLEQKIRHDST-AWNAS--GSILNTLQNAKIEENLICSKYTDLLRIALMAEDIFE--EAHKQVQRGGGG | |||||||||||||
3 | 5mqfM | 0.08 | 0.08 | 3.14 | 1.39 | Neff-PPAS | SPESAEEYIEYLKSSRLDEAAQRLATVVNDERFVSKACDLISQNPDKVQSLNVDAIIRGGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAIRTVMTVRDFTQVFDSYAQFEESMIAAKM------ETASELGREEEDDVDLELRLARFEQLISRRPLLLNSVLLRQNPHHVHEWHKRVALHQGRPREIIN--TYTEAVQTVDPFKATGKPHTLWVAFAKFYEDNGQLDDARVILEKATKVNFKQVDDLASVWCQCGELELRHEN--YDEALRLLRKATALPARRAEYFDGSEPVQNRVYKSLKVWSMLADLKAVYDRILDLRIATPQIVINYAMFLEEHKYFEESFKAYERGISLFKWNVSDIWSTYLTKFIARYGGRKLERARDLFEQALDGCPPKYAKTLYLQLEEEWGLARHAMAVYERATRAVEPAQQYDMFNIYIKRAAEIYGVTVLSDEHAREMCLRFADMECKLGEIDRARAIYSFCSQICDPRTTGAFWQTWKDFEVRH | |||||||||||||
4 | 1vt4I | 0.19 | 0.13 | 4.11 | 1.11 | HHsearch | PETVLEMLQKLRIHSIQAELRRLLKSKPYENCLL-VLLNVQNLSCKILLTTRFKQVTSLDHHSMT-LTPDEVKSLLLKYLDCRPQREVLRRLSIIAESIRDGLAT---WDNWKHV------------------------------NC---DKLTTIIESSLNVLEPAEYRKMFDRLSVFPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKY--SLVEKQPKESTI------------------SIPSIYLELKVKLENEYAL-------HRSI---------VDHYN---------------------------------IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQKIRHDSTAWNASGSI-------------------------LNTLQ----QLKFKPYICD-NDPKYERLVNAILPKIEENLICSKY----------------------TDLLRIALMAED--EAIFE--EAHKQVQRGGG- | |||||||||||||
5 | 5mz611 | 0.09 | 0.08 | 3.11 | 1.13 | PROSPECTOR2 | HIEKLDELVSCTVIGFAEQTAELQQEIAEFGVNGPIDMNSLSKLARITSYYASSEYFQGCRSKDREIFASIPAKLCFFYFYNGELCRAVVCLLDYIDLSTLAKEAALRW----------LMFLGETELIEKKLKTWKMDKSSKDMFSATEFAMNEMLEKLMKLRDKVKSDPTRSFSRYELASYVSWLCSTLSNVPGSALRECEFPDRVSHIRIPGLASSQFDNSVNASIWPFLDGHQEDSNYYVHIGSTIAWHFEMRRECALVNVTTAQTRDSMSAMILNLRVAEKNAKLMRVSCVNLLSSNPIVCNVCTIYPLHSSFAAEYMMSYAIHSDFS----------QLSIKHFNDEFARIRER---GMSSQVLMH-------------------------------RDSSVRPRPNIIQNEIFGMCVIRWLTKKLDSKESADEDTMEIFNNALKIVRYLQQFPMECNYSWMRPTIDKERFEKVRLAMRNEMNHYGHISRDPQSRLEKCKRGLVTM | |||||||||||||
6 | 1qbkB | 0.09 | 0.05 | 1.84 | 1.03 | CNFpred | -------VVKESGILVLGAIAEGCMQGMI----------------------------------------PYLPELIPHLIQCDKKALVRSITCWTLSRYAHWVVSQP----------PDTYLKPLMTELL---KRILD------SNKRVQEAACSAFATLEEEA-YLAYILLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDED---------------------KDLFPLLECLSSVATALQGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDF----------MIVALDLLSGLAEGL---------GNIEQLVANILTLMYQCMQDKMPEVRQSSFALLGDL---------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 2pffB | 0.14 | 0.12 | 3.93 | 1.36 | HHsearch-2 | SLE-HVLLVPTASFFIASQLQE---QFNKILPEPTEGFAAEPTTPELVGKFLGYV-SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQETLVKTKELIKNYITAKRP--FDKKSQLVAIFEELRDLYQTYHV-----LVGDLIKFSAETLSELIRDAELEWLENPSNTPDLLSIPISCPLIGVIQLAHY----------VVTAKLLGFTPGELRS-----YL-KGA-------TGHSQGLVTAV------AIAET--DSWESFFVSVRKAITVLFFIGVRCYE-----------------AYPNTSLP--PSILEDSLENNEGVLSISNLQEQVQDYVNKTNSHL---------------------PAGKQVEISLVNGAKNLVVS-GPPQSNLTLR---KAKAPSGLDQSRIPFSERKLKFSNRLLVDLINKDL--VKN--NVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVETTTQFKATHDGASLTHRNGVRVIVA | |||||||||||||
8 | 5lj3T | 0.06 | 0.06 | 2.48 | 1.11 | Neff-PPAS | -----LTWKRYIEYWKDKQIRWLYERFCSQFV---------------------TDTSIWEDYIRWESETSRIFWLFQRCLKSRDCDRICLSYLELAIEMIRHALASSLMKMEM------------------------HRKVWDPVIKFVEEKVESTDEAELINVLLVKGFWSSHILERYQQKRNESLATLALTRNITIKSVYEKYLLNFNYLASLEKLGDNQYEEFMRQMNGPDKWLFLILSLAKYYIGRLDSCGDLLKKSLQQFDRIYNFYLLFEQECSQFILGKLKENDDWTEKLQAHMATFESLINLYDIYLNDVALRQDSLVETWMKRVSLQKSAANVYSEAILKIDPRKVGTPGSFGRLWCSYGDLYWRSNAISTARKLWTQSLKVPYPYIELEEIYLNWADRELDHVPTNPEILLSLRIWSKYIDYLEAYIFNKTKMAYNTVIDLRPAMIPLFPPEIQYELWIEYLEVATSHPEHIRFLFEKALKNLCSNGIDCKTIFIAYSVFEE | |||||||||||||
9 | 2is1A | 0.08 | 0.07 | 2.88 | 1.11 | PROSPECTOR2 | D--VSYLLDREAVRVLVHRIAWLMS-------VENCSPYSGQLMGTSQGGMRAHHMDANLPQDFQILDSEDQLRLLKRLIKAMNLDEKQWPPRQAMWYINS------------------------QKDEGLRPHHIQSYGNPVE--QTWQKVYQAYQEACDRAGLLLRAHELWLNKPHILQHYRERQYAWIRLLAGDTYGWRGAQVENIQRFLNDFPGAETENNNGRLGKKLWTDGADGEPISLYCAFNELDEARFVVNRIKTWQDNGNAQSRVLEEALLQERQEIKDALSYLRLIVNRNDDAAFERVVNTPTRGIGDRTLDVVRQTSRDRQLTLEKALAGRAASALQRFMELIDALAQTADMPLHVQTDRVIKDSGLRTMY-------------------------EQEKGEKGQTRIENLEELVTATRQFSYNEDLMPLQAFLSHAALEAGEGQADTWQDAPSQMSLDEGGRRLYGKEVYHRPSRFIGELPEECVEEVRLRATVSR---P | |||||||||||||
10 | 3w3tA | 0.08 | 0.04 | 1.67 | 1.03 | CNFpred | -----------ALASVFESLIELVELAPKLFKDM----------------------------------FDQIIQFTDMVIKNKLEPPARTTALELLTVFSENAPQMCK-------SNQNYGQ----TLVMVTLIMMTEVSIDDDDAAEW-VTYDHARQALDRVALKLGGEYLAAPLFQYLQQMRFAAMMALSSAAEGCADVLI--GEIPKILDMVIPLIND------------------------HPRVQYGCCNVLGQISTDFSIQRTAHDRILPALISKLTS------------------------------ECTSRVQTHAAAALVNFSEFA---SKDILEPYLDSLLTNLLVLLQSNKLYVQEQALTTIAFI---------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |