>PF12118 (305 residues) SPVNQGSDARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQ GDGGGGSNAVFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFS EQKVARQQVEQDSNAQAMARENDIERREQVKIRQQEMEVRQLEARQAEVLAHERAHAAVG GQFARAPNFEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVYAAAMAPVNPSQA DLRVAAEALRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNL DKSGA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | SPVNQGSDARFSQVQNTGLTGAEFTSSDEHSVADIFISPNQSSVDGVTTSSAETGRVVSQGDGGGGSNAVFDTGTPVGVQFAREDASNSAVAAQEAEKAAKEAKQQKLAEALGGEREPFSEQKVARQQVEQDSNAQAMARENDIERREQVKIRQQEMEVRQLEARQAEVLAHERAHAAVGGQFARAPNFEYELGPDGKRYATGGEVSIDIASVQGNPQATINKMQQVYAAAMAPVNPSQADLRVAAEALRNIELAKDELASERLAAMPTQDEISPLLDAQNAIDEVPVFEPVTPSLGTNLDKSGA | |||||||||||||||||||
1 | 5voxO | 0.10 | 0.09 | 3.40 | 1.06 | SPARKS-K | -----------------------MATALYTANDFILISLPQNAQPVTAPGSKTDSWFNETLIGGRAFVSDFKIEFKIGSLDTLIVESEELSKVDNQIGASIGKIIEILQGLNETSTNAYRTLPINNMPVPEYLEQWQTRKDKSIKDLITLISNESSQLDADVRATYANYNSAKTNLAAAERKKTGDLVRSLHDIVKPEDFVLNSETTVLVAVPKSLKSDFEKSVQEFTTAAREEFNYSEELIDQLKKEHDSAASLEQSLRVQLVRLAKPPKNLSKCKSELIDAKGKINKQDTSLHQYASLVDTEY | |||||||||||||
2 | 5nnvA | 0.10 | 0.07 | 2.68 | 1.28 | Neff-PPAS | ----------------------------------------------------------------------------LAESSAISAKEAKIEDTRDKIQALDESVDELQQVLLVTSEEEKLEGRKEVLKERKKNAVQNQEQLEEAIVQFQQKETVLKEELSKQEAVFETLQAEVKQLRAQVKEKQQLSNELTELKIAAAKKEQACKGEEDNLARLKKELTETELALKEAKEDLSFLTSESSSTSGEEKLEEAAKHKLNDKTKTIELIALRRDQRIKLQHGLDTYERELKEKRLYKQKTTLL----- | |||||||||||||
3 | 3tnfB | 0.07 | 0.07 | 2.78 | 1.13 | PROSPECTOR2 | LDEYEQAIKRAQENIKKGEELEKKLDKLERQGKDLNLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKWDAIKNNPAALEKAQKDYSQSKHDLATIKMEALIHKLSLEMEKQLETINNLPKENEEATKLLHKHNGLNLKLANGKDQQLFNLGGKFYPIHKEQKILELKQGEKDSPEKQKKAEHDFHKLQYE-TPMTVKKLVHHNKGLETTIHKERVEETKQQL---EDNGKEKIEIANNI--------------------SK | |||||||||||||
4 | 5a9q1 | 0.09 | 0.09 | 3.26 | 1.04 | SPARKS-K | YVPVKGHKLRLAYSPTMGLYLGIYMHAPKRGQFCIFQLSQETLIDFALTHDANQTVVKYINFEHNVAGQWNPVFMQPEEEIVIRDDQDPREMYLQSLFTPQNEALCKALQIFCRGTERNLDLSWSELKKEVTLAVENELQGSVTEYEQEEFRNLQQEFWCKFYACCLQYQEALSH----------PLALHLNPHTNMVCLLKKGYLSFLIPS---SLVDHLYLLPYENLLTEDETDDVDIRIKCLRLIEESVTVDMSVIMEMSCYNLQSPEKAEDMITICSKLQEIRNPDYETRMNLTQLYGSNT | |||||||||||||
5 | 2tmaA1 | 0.15 | 0.07 | 2.33 | 0.93 | FFAS-3D | ------------------------------------------------------------------------------MQMLKLDKENALDRAEQAEADKKAAEDRSKQLE-----DELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAE-ADVASLNRRIQLVEEELDRA--------------------------------------QERLATALQKLEEAEKAADESERGMKVIESRAQKDEEKMEIQEIQLKEA--------------------------------------- | |||||||||||||
6 | 2bydA | 0.09 | 0.04 | 1.50 | 0.29 | HHpred | -------------------------------------------------------------------------------------------------------------------------------------------SRAEWLLAVRSIQPEEKERIGQFRDAKAAMAGRLMIRKLVAEKLNIPWHIRLQRTAKGKPVLAKLQVGIDIMKTSFPGRGSIPEFFHIMKRKFTNKEKDEWTQLDM--------FYRNWALKESFIKAIGVGLGFELQRLE------------------------- | |||||||||||||
7 | 4cgkA | 0.12 | 0.10 | 3.47 | 0.89 | MUSTER | ----SNLTAQQQEAQK---QVDQIQEQVSAIQAEQ-----SNLQAENDRLQAESKKLEGE------------------ITELSKNIVSRNQSLEKQARSAQTNGAVTSYINTIVNSKSITESRVAAMSEIVSANNKMLEQQKADKKAISEKQVANNDAINTVIANQQKLADDAQALTTKQAELKAA---------------------------ELSLAAEKATAEGEKASLLEQKAAAEAEARAAAVAEAAYKEKRASQQQSVLASANTNLTAQVQAVSESAAAPVRAKVRPTYSTNASSYPIGE | |||||||||||||
8 | 5v5sA | 0.09 | 0.03 | 1.14 | 0.49 | CNFpred | -----------------------------------------------------------------------------------ENLMQVYQQARLSNP--------------------------------------------------------------ELRKSAADRDAAFEKINEARSPL-LGADYTYSNGNGINSNATSASLQLTQSIFDMSKWRALTLQEKAAGIQDVTY--QTDQQTLILNTATAY----------------------------------------------------- | |||||||||||||
9 | 4pxjA | 0.20 | 0.04 | 1.16 | 0.39 | HHsearch-2 | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PEFTKNALNVVKNDLIAKVDQLSGEQEVLRGELEAAKQAKVKLENRIKELEEELKR--------------------------------- | |||||||||||||
10 | 2tmaA | 0.13 | 0.12 | 4.10 | 1.11 | Neff-PPAS | -------DAIKKKMQMLKLDKENALDRAEQAEADKKAAEDRSKQLEDELVSLQKKLKGTEDELDKYSEALKDAQEKLELAEKKATDAEADVASLNRRIQLVEEELDRAQERLATALQKLEEAEKAADES-ERGMKVIESRAQKDEEKMEIQEIQLKEAKHIAEDADRKYEEVARKLVIIESDLERAEERAELSEGKCAEL-----------------EEEIKTVTNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERSVTKLEKSID--DLEDELYAQKLKYKAISEELDHALN | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |