>PF12077 (570 residues) MGFFKPELPQIDMAEWSKGTRSEKIRPMARHWAEVGFGTPVALHLFYVVKIGLYILGGAL FALTTKGIDGFAAVGSWWSEPIVFEKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSILYW LRPGTIRLPPWPQRIPFTKGTARTPVDVALYAALLMMLLWCLFSDGTGPIPALHTEIGLL PVWQIWTVLGLLTVLGLRDKVIFLAARGEVYASLAVTFLFPGVDMIVASKAVFVVIWMGA ATSKLNHHFPFVISTMMSNNPLIRARSMKRAFFERFPDDLRPGRLSRIVAHGGTTVEMCV PVVLFFSHGGWVTAVAAAVMVCFHLAILTAIPMGVPLEWNVFMIYGIGALFVAYAHLGLT DLTHPVPVAILFAVLVGIVIAGNMFPRKISFLPGMRYYAGNWDTTLWCVKPSADDKIARG LVAIASMPAAQLERFYGKDRALIPMYLGYAFRAMNTHGRALFTLAHRAMAGQNEDDYVIT DGERICSTAIGWNFGDGHMHNEQLIAAMQQRCHFEPGEVRVVLLDAQPIHRQTQEYRLVD AATGEFERGYVRVADMVTRQPWDDTVPVHV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 540 560 | | | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MGFFKPELPQIDMAEWSKGTRSEKIRPMARHWAEVGFGTPVALHLFYVVKIGLYILGGALFALTTKGIDGFAAVGSWWSEPIVFEKVVLYTMLFEVVGLGCGFGPLNNRFFPPMGSILYWLRPGTIRLPPWPQRIPFTKGTARTPVDVALYAALLMMLLWCLFSDGTGPIPALHTEIGLLPVWQIWTVLGLLTVLGLRDKVIFLAARGEVYASLAVTFLFPGVDMIVASKAVFVVIWMGAATSKLNHHFPFVISTMMSNNPLIRARSMKRAFFERFPDDLRPGRLSRIVAHGGTTVEMCVPVVLFFSHGGWVTAVAAAVMVCFHLAILTAIPMGVPLEWNVFMIYGIGALFVAYAHLGLTDLTHPVPVAILFAVLVGIVIAGNMFPRKISFLPGMRYYAGNWDTTLWCVKPSADDKIARGLVAIASMPAAQLERFYGKDRALIPMYLGYAFRAMNTHGRALFTLAHRAMAGQNEDDYVITDGERICSTAIGWNFGDGHMHNEQLIAAMQQRCHFEPGEVRVVLLDAQPIHRQTQEYRLVDAATGEFERGYVRVADMVTRQPWDDTVPVHV | |||||||||||||||||||
1 | 5mz61 | 0.09 | 0.09 | 3.31 | 1.12 | SPARKS-K | TACKMFITWQTLRKEAMECRSKDRPAKLCFFYFYNGELCRAVVCLLDYIDLSDDTLAKEAALRWLMFLGETEDMFSATEFAMNYLKKYELASYVSWLCSTLSNVPVGSALCEFPDRVSLASSQFDNSVNASIWPFHQEDSNYYVHIGSTIAWHFEMRRECALVNVTTAQTR------------DSMSAMILNLRVALKSASFFRVLQTTNTLAYYSSIIAGSEKNAKLMRVSCVNLLNVCTIYPLHSAAEYMMSYAIHSDIRERGMSSQVLMHRDSSVRPRPNIIQNEIFGMCVIRWLTKKLALKIVRYLQQRTTDMILAVTQLGRQLEFPMECVRLAMRNEMNCRLFAYVGRTSRDPWEAAYAWAESTQIGARNAVQSRLEKCKRGLVTMMPDLVQIAMADDKTIYLVKLHAYSQAVELMDKFTFLLDEDEMIAKYPDEVQKHFLGVAASLLMPSGAAELAIKIHKLSKG--------GLLLGEAKEMVYQSKLMDAKSWEALILRFCEVMNQDEKKYTYLVIERLPIFDEYPYGRQVS------------IHSTFSQLEAEKQIPLQI | |||||||||||||
2 | 4n5cA | 0.13 | 0.11 | 3.89 | 1.07 | FFAS-3D | LG--GSTFNSGFDSLDSVLNLQFRLHY---HVIGSNGPAKPVCDVLLLVEKILFNCLGILFIHNNTAKTALEQYDRYLIENLYYRGLVFYKELLAHV-----------DTIPPESNGLLFLRFNQIQDLAENAKFPTASETNDEALEHFNVFLQYYFKFTHIKKIKVNPSWIISSEKTFQSIEVSKTAFLFQNLSDNSNDEIKKKTFKRESILNFVNFVKSHRDIISFIDAYSFILQNSSKTDSIENVFDYSLNSFYKEYNLPLSQSESLDWLENSTRCVYPGNISKVLTNASTLYEIRKYQLDFLVSNNLTSYLCLQFKYSYTLTLESLILSKNPNYYKAWHLLALCRSVLQNNTLLLNDRWQFIHLKLTQLALIVFELYATLFPDQVWIFAANYRTKDND--------EDAKAAIKEASNVNLNCNIANGYLSIIPGVALKEFETVLYY--DENNLDALVGFAELIFPVNDTDRSAYARLKFLLECAIAYYSPESLIYENSLLKCIKRYCNY-------------------------------------------------------- | |||||||||||||
3 | 4g7sA | 0.09 | 0.07 | 2.59 | 1.53 | CNFpred | ---------------VYEA---YPEKKATLYFL--------VLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQ---SYYQGLTLHGVLNAIVFTQ----------LFAQAIMVYLPARELNMRPNM---------GLMWLSWWMAFIGLVVFALPLLAN---------------EATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWR-VTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTG---HPIIYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFA-DPTWKMIHSVLTLFVAVPS-----------LMTAFTVAASLEFAGRLRGGRGLFGWIRALPDNPAFVAPVLGLLGFIPGGAGGIVNASF-TLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKP----------ISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLN---------------------------------------------------------- | |||||||||||||
4 | 5ezmA | 0.08 | 0.07 | 2.81 | 1.30 | Neff-PPAS | -----DMRHLVG-------PDEGRYAEISREMFASGWVTIRYNALKYFEKPPFHMWVTVVGYELFGL------------GEWQARLAVALSGLLGIGVSMMAARRWFGARAAAFTGLALLAAPMWSVAAHF------------NTLDMTLAGVMSCVLAFMLMGQH--------PDASVAARRGWMVACWAAMGVAILTKGLVGIALPGLVLVVYTLVTRDWRRLHLALGVVVMLVITVPWFYLVSVRNPEFPNFFFIHEHWQR-------------RSGSVFYFLPLVIGGFLPWAGIFPKLWTAMRARFRPALMAGIWAIAIFVFFSISR--SKLPGYIVPVIPALGILAGVALDRLSPRSWGKQLIGMAIVAACGLLASPVVATLNANHIPNSFYRAYAVWVAVAFVVMLLGIAVARLLLRRGVLPSVAVYAMGMYLGFTVALLGHETVGRPASGADIAPQIAQKLTPEMRHPLMMVGQADELTFGATVEPQRVVPDVDSFTKLWKNG----QPAMAVMSPDTYLALAPTLSMYVVARDWR------RVVVANVASLAGPQ------ | |||||||||||||
5 | 6eznF | 0.08 | 0.08 | 3.00 | 1.40 | PROSPECTOR2 | SCV------------------LSVFQTILKLVI---------------FVAIFGAAISSRLFAVIKFESIIHEFDPWFNYRATKYLVNNSFYKFLNWFDDRTWYPLGRVTGGTLYPGLMTT------SAFIWHALRNWLGLPIDIRNVCVLFAPLFSGVTAAIVPGYISRSVAGSYDNEAIAITLLMVTFMFWIKAQKTGSIMHAT---CAALFYFYMVSAWGGYVFITKLYSAYTTWYAIGTVASMQIPFVGFLPIRSNDHMAALGVFGLIQAKFKVIMQPVSWPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLDFKIKPASGSFIFYLYLFVFHSTWVTRTAYSSPSVVLPSQTKLALIDDF---REAYYWLRMNSDEAAWWDYGYQIGGMNNTHIAIVGKAMKSYEILKEHDNKFLWMIRISEGIWPEE---IKERDFYTAE--GEYRVDARASETMRNSLLYKMSYKDFPQLFNQMITPLDVPPLDYFDEVFTSENWMVAQGRTLRDVGELTRSSTKTRRLRV | |||||||||||||
6 | 5nd1B | 0.13 | 0.11 | 3.98 | 1.12 | SPARKS-K | TITLSGSTSSTQD-----NSDSAKLFALAVSQVWGGAST---------------------VGIVAPMLQTVAQEQTFRARHHAALTTVVTTIVGWLMHVG------DSAAKRSRDGWLDHQTDFAVKGMLTPHIASGM-----DWAGVQTYSASAMSTLRKQTLRSRGTTETENSGRYLLALAGVAAAALALPKLGGAGHANLTAVMSEVYLLGFALRHMADAEQVIRNVLAQVASLFRPAACSAHEWMNVHGALMPKVSRPMNEPAFREVWNVNSSSDLQMIHFLRQLAQQITVNCTGTAMAIYITDGD---TTRLQKDLYHHLFANTRMAMVPP--------VNALAAWGLGSSMDSFTGPHCALASYLAMAQLAGVVDGGLVTEGHVYTTISAQWNGNWLLWHACKTEDSAEEVKSAVEWLSSNAHRFRSSLYTPSELRDALFVVDRIWKIVMAMRAQLMLISVQEDGGRHQHSKHYFGEAAAIGVMG------HGFTNLFAYCASTVHGGREARLIVAQLSTLLAHGGAWCNAVTSIGLSILGDGTMPLQ----TVPWTVNEITYL | |||||||||||||
7 | 6h7wQ | 0.11 | 0.10 | 3.56 | 1.06 | FFAS-3D | --LLEDALIAVRQQTATPGKLMDALKCCSTLVSELRTSSPKQYYELYMAVFDALRYLSAHLRENHPV----NHLADLYELPRLYLMITVGTLMKDMMGVQ---HPVRGLF------LRYYLSGQARDYLPTGDSDGPEGNLQDSINFILTNFVEMNKLWVRLQHQGHSRERD----------LRTQERRELQLLVGSNIVRLSLPTYRDSILGPLLEQIVQCRDILA-QEYLLEVITQVFPDEYHLHTLDQFLGAVSRLNPHVNVKAIVIGMMNRLSDQAQHLPIQDTIALCCSLANLSLNVDGILASQPAQQSLLSLLQSPLRFTALSLPTYVSLFQARRAIAGEIVRTLLKNQTL----ISTPAHLENVLEILKVLGWLARLVDTQFRLLQMTRKAYAEGNERIRTTTPPLITAGLKLARRFKARESSSLFKFLGVADLCLRLFCSCGQVADMTEFAQAFTVYEESISDSKAQFQAVC-------VIAS-ALHRTRNFGRENYDTLITKCAQKPDQCRAVYLASHLWWATPIAARGETEDTELYRDGK-RVLECLQR----------- | |||||||||||||
8 | 3s8fA | 0.09 | 0.07 | 2.64 | 1.52 | CNFpred | --------------------SRVYEAYPEKKAT-------LYFLVLGFLALIVGSLFGPFQALNYGNVDAYPLLKRLLPFVQSYYQGLTLHGVLNAIVFT----------QLFAQAIMVYLPARELNMRPNM---------GLMWLSWWMAFIGLVVAALPLLAN---------------EATVLYTFYPPLKGHWAFYLGASVFVLSTWVSIYIVLDLWR-VTPLVTYMAVVFWLMWFLASLGLVLEAVLFLLPWSFGLVEGVDPLVARTLFWWTG---HPIVYFWLLPAYAIIYTILPKQAGGKLVSDPMARLAFLLFLLLSTPVGFHHQFA-DPTWKMIHSVLTLFVAVPS-----------LMTAFTVAASLEFAGRLRGGRGLFGWIRALPDNPAFVAPVLGLLGFIPGGAGGIVNASF-TLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTGKP----------ISDAQRRLGLAVVWLWFLGMMIMAVGLHWAGLLN---------------------------------------------------------- | |||||||||||||
9 | 6eznF | 0.10 | 0.10 | 3.59 | 1.30 | Neff-PPAS | FAVIKFESIIHEFDPWFNYRATKYLVNNSFYKFLNWFWYPLGRVTGGTLYPGLMTTSAFIWHALRNGLPIDIRNVCVLFAPLFSGVTAWATYEFTKEIKDASAGLLAAGFIAIVPGYISRSVAGSY------------------DNEAIAITLLMVTFMFWIKAQKTGS-----------IMHATCAALFYFYMVSAWGGYVFITNLIPLHVFLLILMGRYSSKLYSAYTTWYAIGTVASMQIPFSNDHMAALGVFGLIQIVAFGDFVKGQITAKFKVIMQPVSWPAFFFDTHFLIWLFPAGVFLLFLDLKDEHVFVIAYSVLCSYFAGVMVRLMLTLTPVICVSAAVALSKIFDIYLAALLAKLIVSGSFIFYLYLFVFHSTWVTRTAYSSPSVVLPSQTKLALIDDF-REAYYWLRMNSDEDSKVAA-----WWDYGYQIGGMADRTTLVDNNTWNNTHIAIVGKAMASPEEKSYEILKEHDVIFGGLIGFGGDDINKFLWMIRISEGIWPYTAEGEYRVDARASETMRNSLLYKMSYKDFPQLFNGGQATDRVRQQMITPLDVPPLD | |||||||||||||
10 | 3nowA | 0.09 | 0.09 | 3.27 | 1.27 | PROSPECTOR2 | NATFDLATPIDKAELLYKDHCIAKVASLTKVVAALCENSVERTKGVLCVSTAQFCLQTILNALSGLKNKPDSKPDKELCTRNNREIDTLLTCLVYSITDRTISGATRNVHYTALEWAERLVEIRELEDYKYESAMDITGSNMYYDEAKARFTDQIDEYIKDKLLAP--------------DMESKVRVTVAITALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQGVDILKSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL--------TLDAECKEKLIEDKASIHALMD-----LARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEE---HELDDVDFINKRITVANEGITTALCALAKTESHNSQELIARVLNAVKVVQEGGVKALLRMALEGTEKGKRHINPEVSFSGQRSLDVLQQDCTALENFESLMTNLASMNESVRQRIIKEQGVVMSEDVIKMFEGNNDRVSVSVKCCEKILAIASWLPDDTRII | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |