>PF12006 (304 residues) AVAEEMAAAANNLLATLTPEQAARATYPLNDNERFNWHFIPRERKGLPFKEMTPEQKHLA HALLSTALSHRGYLKASTIMSLEQVLRDLEQGKGPPRDPERYFVTIFGKPDAKATWGWRV EGHHLSLNFMLVEGKEISVTPSFLGSNPGEVREGPRKGLRVLGAEEDLARQLVKSLTDEQ KKAAIYTNTAPREIITGNDRKARALSPTGISAAKLNAAQTELVWQLIKEYVYRYRPEIAD HDLKKIEQAGTKNLYFAWAGSIEPKEGHYYRVQGPTFLMEYDNTQNDANHIHAVWRDFEH DFGE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | AVAEEMAAAANNLLATLTPEQAARATYPLNDNERFNWHFIPRERKGLPFKEMTPEQKHLAHALLSTALSHRGYLKASTIMSLEQVLRDLEQGKGPPRDPERYFVTIFGKPDAKATWGWRVEGHHLSLNFMLVEGKEISVTPSFLGSNPGEVREGPRKGLRVLGAEEDLARQLVKSLTDEQKKAAIYTNTAPREIITGNDRKARALSPTGISAAKLNAAQTELVWQLIKEYVYRYRPEIADHDLKKIEQAGTKNLYFAWAGSIEPKEGHYYRVQGPTFLMEYDNTQNDANHIHAVWRDFEHDFGE | |||||||||||||||||||
1 | 5sujA1 | 0.13 | 0.09 | 3.22 | 0.67 | SPARKS-K | VPAEVLGQQAERSIPSINKQQIAKEVSKVCHTE-------PTQ-----------SCGQASNDVCELLLGKIEAEKFHFGDNLKNVLENTAPSST------NLLIRFEIDREDPDFW----IGSHSFTIYIPQSPRQFYPYQAYFGS----------HTLQWFVS--DKDEYLSRIGIDKYIEKLAVLGKTYAEFFSKRGREAFEKRQP-LRVTEINPELALKNLQETQEFIDTHPGENPSDKVENYRNRAKLATEHLESLLDI----------------------------------------- | |||||||||||||
2 | 5mdtA | 0.14 | 0.07 | 2.35 | 0.68 | FFAS-3D | SGIAEFDGILDSLEHSKTGISGSKI------LKLTNL-----------SMENVSENAQFVASVYKYAKRAPVTHKLGALYILDSIVRSFQDGAKKNNE------------------------------------------------------SFENPVDASFSGGWCKAAEITDSLVADAIQHA-------------------------------PSAHLPKILKLCDIWEKAFPPEKLESLRSKLKDAM------------------------------------------------------ | |||||||||||||
3 | 2pffB | 0.14 | 0.14 | 4.70 | 0.52 | HHpred | --GNDIHALAAKLLQLIKNYITAMAKRPFDKSNSALFRAVGEAQLVAIFGGNTDDYFEELRDLYQTYHVL----VGDLIKFSAETLSELIRTAEKVFTQGLNILEWLENPSN-TPDKDYLLSIPISCPLIGVQLAHYVVTAKLLGFTPGELRSYATGHSQGLVTAVAIAESFFVSVRKARCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGPPQSLYGLNLTLRKSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPVSFNAKDIQIPVYDTFSDLR- | |||||||||||||
4 | 3tnfB | 0.09 | 0.08 | 3.12 | 0.67 | MUSTER | KRAQENIKKGEELEKKLDERQGKDLEDKYKEKLLTDSEELSLSEINEKMEAFSKDSEKLTQLMEKHKGDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLK----------DAHLAINKDQEVVE----HEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKMEA--LIHKLSLEMEKQLETIN---LIMSTDPKENEEATKLLHKHNGLNLKLANLQDMLAVHRK----EKSFF--GEVTSLNDAHYVIGKDQQLFNFYPIHKE-----QKILEKDGKFGE | |||||||||||||
5 | 6asyA | 0.11 | 0.08 | 2.74 | 0.71 | CNFpred | -----PEEISAMVLTKMKETAEAYLGKK-----VTHAVVTV-------PAYFNDAQRQATKDAGTIAGLNVMRIINEPTAAAIAYGLDKR-------GEKNILVFDLGG------------GTFDVSLLTIDNGVFEVVATNGDTHLGGED------------FDQRVMEHFIKLYKKKTGKDVRKDNRAVQKLRREVEKAKRALHQARIEIESFY-LTRAKFEELNMDLFRS-TMKPVQKVLEDSDLKKSDIDEIVLVGG------------------------------------------- | |||||||||||||
6 | 2pffB | 0.14 | 0.14 | 4.71 | 0.86 | HHsearch-2 | LEGNDIHALAAKLLQLIKNYIRIMAKRPFDKKNSALFRAVGEAQLVAIFGGNTDDYFEELRDLYQTYHV----LVGDLIKFSAETLSELIRTAEKVFTQGLNILEWLENPSN-TPDKDYLLSIPISCPLIGVQLAHYVVTAKLLGFTPGELRSYATGHSQGLVTAVAIAESFFVSVRKARCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGPPQSLYGLNLTLRKSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPVSFNAKDIQIPVYDTFSDLRV | |||||||||||||
7 | 3rgaA | 0.09 | 0.07 | 2.78 | 0.69 | Neff-PPAS | --ETVRKEVALEYCRRVNAGELEGVLQLFAPDARLVDPLGTEPVVG-----------------------RAALAARLAPALRGAVHEEPGRPYAAHDGTSVVLPATVTVGAPGAPPQRRGRTRVMGVIEVGEDGLIREMRVMW----GVTDSSWTARPAPDEERRKELAREHCLRINDGDVDGLLYSPRIRFEDPVGS------WTRTG----------LEALRAHATMAVGSNVTMDYLPSGPLLARHH-------LMTLPAPADPHRALIGIEYVMVIGVDADGLIDEMRAYWATDVSLLDP | |||||||||||||
8 | 5x2dA | 0.06 | 0.02 | 0.71 | 0.47 | HHsearch | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------PSLPPEIIVISANMSLEDQIKIARETIPIAPGALGRLTENLKSFADK-TFGGCWQVMVVDGVPNMSFQFELYNRAYL---------------FWQTSE----- | |||||||||||||
9 | 5h8vA1 | 0.13 | 0.10 | 3.29 | 0.86 | SP3 | KDILFAQQTAENIAALLTPQ---------SGAYYDLWV------DGEKIMEEPPEVTKARNDNSHGTNFP----------------DSPEPIYGTQYLPRKFKVAVTAAGDNSVD----ILTNDIGVVVVSDDAGEPIGFNIYVGGGMGRTHRVETTFPRLDDRKYSRMKYMIDRWGIDRFRAEVYGKKFESFRPLPEWQFNSYLQGDGVDNGRVGGQAKKTLREIIEKYLCGIDQAWREPITTALAQAGLL---------------------------------------------------- | |||||||||||||
10 | 3tnfB | 0.08 | 0.07 | 2.62 | 0.82 | PROSPECTOR2 | L--DEYEQAIKRAQENIKQGKDLEDKYKTYEENLEGFEKLLTDSEELSLSEINEKMEAFSKDSEKLTDEKTVQSLQREHHDIKAKLANLQVLHDAHTGKKSYVNEKGNPVSSLKDAHLAINKDQEVVE---------------HEGQFYLLQKGQWDAIKNNPAALEKAQKDYSQSKHDLATIKM------------------------EALIHKLSLEMEKQLETINNLIMSTDPKENEEATKLLHKTSLNDAHYVIGKDLFNLGGKFYPIHKEQKILEKDGK-------FYLLKQGEDNISK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |