>PF11925 (367 residues) VQNVQALVIDNGPAAASGSVNAPYVSLTICQPGSATQCQTIDHILVDTGSSGLRIMSSVL ASNLALPSVASANGSPLAECARFADGYSWGSVKQADLRIAGEVASGISVHIIGDSAFPSV PNGCSGSLVAENTVAAFHANGVLGISTFIQDCGSACASQALEGWYYSCPSSNNCTATTLA VNRQVGNPVAVFPQDNNGTVIQLPSVGANGASGVTGSLIFGIGTQANNALGSASIYTLNS SGNLSALYQGQVMQAFFDSGSNGLFFADTSIPNCTSSKGFYCPSSTLSRSVVNTGLNGRN STVNFNIVNADTLFQANPNNTAFNNIGGGAAFASFFDWGLPFYFGRSVYTALEGVSAGGT TGPYIAY |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VQNVQALVIDNGPAAASGSVNAPYVSLTICQPGSATQCQTIDHILVDTGSSGLRIMSSVLASNLALPSVASANGSPLAECARFADGYSWGSVKQADLRIAGEVASGISVHIIGDSAFPSVPNGCSGSLVAENTVAAFHANGVLGISTFIQDCGSACASQALEGWYYSCPSSNNCTATTLAVNRQVGNPVAVFPQDNNGTVIQLPSVGANGASGVTGSLIFGIGTQANNALGSASIYTLNSSGNLSALYQGQVMQAFFDSGSNGLFFADTSIPNCTSSKGFYCPSSTLSRSVVNTGLNGRNSTVNFNIVNADTLFQANPNNTAFNNIGGGAAFASFFDWGLPFYFGRSVYTALEGVSAGGTTGPYIAY | |||||||||||||||||||
1 | 1mppA | 0.13 | 0.11 | 3.84 | 1.38 | SPARKS-K | GSVDTPGLYDF-------DLEEYAIPVSIGTPGQ-------DYLLFDTGSSDTWVPHKGCDNSEGCVGKRSSSTFKETDYITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSG-------PTAEQSPDS--ELFLDGIFGAAYPDNTAMEAEYGDT------------------------YNTVHVNLLISSPVFSVYMNT------NDGGGQVVFG-GVNNTLLGGDIQYTDVLKSPVTGVKIDGGAQAFTIDTGTNFFIAPKAALPDATESQQGYYQDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGE-TCMFIVLPDGGNQFIVGNLFLRFFVNVYDFGKNR--------IGF | |||||||||||||
2 | 4ehcA | 0.19 | 0.13 | 4.14 | 0.75 | FFAS-3D | ---TVPLQLVNT--------TEPVVFISL--NGGQVP------VLLDTGSTGLVDSQFLTQN-FGPVIGTGT--------AGYAGGLTYYNTYSTTVDFGNGLTLPTSVNVVTSSSPGTLGNFLSRS----------GAVGVLGIGPNNGF--------------------------------PGTSSIVTAPGLNNGVLIDESA----------GILQFGP-----NTLTGGITISGAPISTVAVQIDNGQQAPVFDSGGINGTIPSALASLPSGGF---VPAGT---TISVYTSDGQTLLYSYTTTA----------------TNTPFVTSGGVNTGHVPFAQQPIYVSYSPTIGT--------- | |||||||||||||
3 | 4ehcA | 0.20 | 0.14 | 4.44 | 1.50 | HHpred | TNATVPLQLVN--------TTEPVVFISLN--GG-----QV-PVLLDTGSTGLVDSQFLTQ---NFG---PVIGT---GTAGYAGGLYNYNTYSTTVDFGNGLTLPTSVNVVTSSSPGTLGNFLSR----------SGAVGVLGIGPNNGF--------------------------------PGTSSIVTAPLLNNGVLIDES----------AGILQFGPNTLT-----GGITISGAPISTVAVQIDNGPLAPVFDSGGINGTIPSALAS--LP-SGGFVPAGT-TISVYTS--DGQTLLYSYTTTATN-----TP-F-VT---------SGGVNTGHVPFAQQPIYVSYSPT-IGT-------- | |||||||||||||
4 | 1mppA | 0.15 | 0.13 | 4.29 | 1.03 | MUSTER | GSVDTPGLYDFDLE-------EYAIPVSI-TPG-----QDF-YLLFDTGSSDT-VPHKGCDNSEGCVGKRFSSTFKETDYNL-GTGGANGIYFRDSITVGGATVKQQTLAYVDNV---------SGPTAEQSPDSELFLDGIFGAAY-----PDNTAMEAEYGDTY------------NTVHV---NLYKQGLISSPVFSVYMNT------NDGGGQVVFG-GVNNTLLGGDIQYTDVLKSDGSDAVSFDGAQAFTIDTGTNFFIAPSSFLPDATESQQGYYQDSKTTFSLVLQKSGSSSDTIDVSV-PISKMLLPVDKSGETCMFIVLPDGGNQFIVGNLFL--RFFVNVYDFGK------NRIGF | |||||||||||||
5 | 4ehcA | 0.21 | 0.14 | 4.59 | 2.68 | CNFpred | TNATVPLQLVN--------TTEPVVFISLNG-------GQMVPVLLDTGSTGLVMDSQFLTQNFGPVIGTG--------TAGYAGGLTNYNTYSTTVDFGNLLTLPTSVNVVTSSSPGTLGNFLSRS----------GAVGVLGIGPNNG-------------------------------FPGTSSIVTAMPLLNNGVLIDES----------AGILQFGPNTL-----TGGITISGAPISTVAVQIPLQQAPVMFDSGGINGTIPSALASLP---SGGFVP-AGTTISVYTSD--GQTLLYSYTTTAT-----------NTPFVTSG----GVMNTGHVPFAQQPIYVSYS-------------- | |||||||||||||
6 | 4ehcA | 0.21 | 0.14 | 4.60 | 2.03 | HHsearch-2 | TNATVPLQLVN--------TTEPVVFISLN--GG-----QV-PVLLDTGSTGLVDSQFLTQ---NFG---PVIG---TGTAGYAGGLYNYNTYSTTVDFGNGLTLPTSVNVVTSSSPGTLGNFLSR----------SGAVGVLGIGPNNGF--------------------------------PGTSSIVTAPLLNNGVLIDES----------AGILQFGPNTLT-----GGITISGAPISTVAVQIDNGPLAPVFDSGGINGTIPSALASL--P-SGGFVPAGT-TISVYTS--DGQTLLYSYTTTATN-----TP-F-VT---------SGGVNTGHVPFAQQPIYVSYSPT-IGTTT------ | |||||||||||||
7 | 1mppA | 0.12 | 0.11 | 3.73 | 1.44 | Neff-PPAS | --GSVDTPGLYDFDLE-----EYAIPVSIGTPG-----QDF-YLLFDTGSSDTWVPHKGCDNSEGCVGKRTFKETDYNLNITYGTGGANGIYFRDSITVGGATVKQQTLAYVDNVSGPTAEQSPDSE---------LFLDGIFGAAYPDNTAMEAEYGDTYNTVHVNLYKQGLI--------------------SSPVFSVYMNT------NDGGGQVVFG-GVNNTLLGGDIQYTDVLKSDGSDAVSFDGAQAFTIDTGTNFFIAPSSFADATESQQGYTVPDSKTTFSLVLQKSGSSSDTIDVSVPISKMLLPVDKSGETCM-FIVLPDGGNQFIVGNLFLRFFVNVYDFGKNRIGFAPLASGYE | |||||||||||||
8 | 4ehcA | 0.20 | 0.14 | 4.52 | 2.40 | HHsearch | TNATVPLQLVN--------TTEPVVFISLN--GG-----QV-PVLLDTGSTGLVDSQFLTQ---NFG---PVIGT---GTAGYAGGLYNYNTYSTTVDFGNGLTLPTSVNVVTSSSPGTLGNFLSR----------SGAVGVLGIGPNNGF--------------------------------PGTSSIVTAPLLNNGVLIDES----------AGILQFGPNTLT-----GGITISGAPISTVAVQIDNGPLAPVFDSGGINGTIPSALAS--L-PSGGFVPAGT-TISVYTS--DGQTLLYSYTTTATN-----TP-F-VT---------SGGVNTGHVPFAQQPIYVSYSPT-IG--TT--T-- | |||||||||||||
9 | 1wkrA | 0.16 | 0.13 | 4.18 | 1.20 | PROSPECTOR2 | AAGSVPATNQLV---------DYVVNVGVGSPA-----TTY-SLLVDTGSSNTWLGAD--------KSYVKTSTSSATSDVTYGSGSFSGTEYTDTVTLGSLTIPKQSIGVASRDSGFD------------------GVDGILGVGP-----------VDLTVGTLSPHTSTSIPTVTDNLFSQG-------TIPTNLLAVSFEPTTSES--STNGELTFG-ATDSSKYTGSITYTPITSTSPQSIRYGSSSTAGIVDTGTTLTLIASDGAVADNNTGLLRLTANLQSLFFTIGG-------QTFELTPRNLNTAIGGSASIVGDLGSDSGEGLDFINGLTFFYNKRLGLATTSFTTATSN------ | |||||||||||||
10 | 4ehcA | 0.21 | 0.13 | 3.98 | 0.77 | SAM | ------------------------------------------PVLLDTGSTGLVDSQF-----QNF------GPVIGTGTAGYAGGLTYNYNTSTTVDFGNGLLLPTSVNVVTSSSPGTLGNFLSR----------SGAVGVLGIGPNN---------------------------------FPGTSSIVTAPLLNNGVLIDES-----------GILQFGPNTLT---GITISGAPIST---VAVQIDNGPL-PVFDSGGINGTIPSALAS--LPSGGFVPAGTTISVYTS----DGQTLLYSYTTTATNTPFVT----------------SGGVNTGHVPFAQQPIYVSYSP------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |