>PF11920 (274 residues) GVLLTLGFVPASQAVEILRWERLPLPVPLVVGQERVVFIDRNVRVGVPASVGDHLRVQSA GGAIYLRASEPIPPTRLQLQDVESGALILLDIAAEPAKDGQAPLEPVRIVEAEAPAKRYG GSATSGADEQADAPTDKPVPRRETPVPVVLTRYAAQNLYAPLRTVEPVAGIGRVNLRRDL TLDTLLPTLPVRARALAAWRLEDQWVTAVRLTNTAARWLDLDPRALQGNFVAATFQHPNL GPAGTPSDTTVLYLVTRGHGLAESLLPALSPIDA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 260 | | | | | | | | | | | | | | |||||||||||||
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Seq | GVLLTLGFVPASQAVEILRWERLPLPVPLVVGQERVVFIDRNVRVGVPASVGDHLRVQSAGGAIYLRASEPIPPTRLQLQDVESGALILLDIAAEPAKDGQAPLEPVRIVEAEAPAKRYGGSATSGADEQADAPTDKPVPRRETPVPVVLTRYAAQNLYAPLRTVEPVAGIGRVNLRRDLTLDTLLPTLPVRARALAAWRLEDQWVTAVRLTNTAARWLDLDPRALQGNFVAATFQHPNLGPAGTPSDTTVLYLVTRGHGLAESLLPALSPIDA | |||||||||||||||||||
1 | 4on1A | 0.12 | 0.11 | 3.73 | 0.81 | SPARKS-K | DLAGVLSKISNTEHTIMLQEGSELWTTSIKAIHGVEIEESRPVYLFEGQD-KDSINAILSQSYATIRLQRG-------------GDLIDYIVYVVCNTGD---IKNIRIDITKAIGNNPF----KGLPIKDYPTEATYPEKDGGSLEHDITSQIQAVTTSLKFLID--SGFITVKYGASDYEVSALDKKPYILLRDGTWDSGKTFGYAS----GIGVIHLNNPRGNFEVAAISTTSSSHLGAEDNEQD--LMY-----TWYSPQVTPNHLSADN | |||||||||||||
2 | 2mzvA | 0.10 | 0.06 | 2.14 | 0.56 | FFAS-3D | ------------------------------LGGVHDSNSNPDTHSLARFAVDQEAREQVVAGTLH----------HLVLEVLDAGKKKLYEAKIWVKPWMDFK----QLQEFKHVRDVPSFTSSDLGAKTDDQVSGWRPVPVHDPVVQDAAHHAIKTIQERSNSLFPYE--------------------LSEVVHANAEVVDTKFDMLLKVKRGGKEEK------------------------------------------------------- | |||||||||||||
3 | 4yguA1 | 0.05 | 0.01 | 0.66 | 0.24 | HHpred | ---------RKVDAFSSIEITS-VGTIHFTQSDT------YSFRIEGREKYVKNTETTVKDGRLLIGFKD---GVTIWISAPD---LKEVEFTGVG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
4 | 5uw3A | 0.15 | 0.14 | 4.57 | 0.75 | MUSTER | AYFAFGIHSGLTEWVTIKILKRSYLPDTLEVKFSPAIWTHDNFYCPYPP--NQEARYHFLGTDILLWRDLENPAHHLKCQITDDGKYFLLYILDGCDDANK-----VYCLDLTKLPNGLESFAPFMKLIDSFDASYTAIANDGS----VF--TFQTNKDAPRK------KLVRVDLNNPSVWTDLVPESK-KDLLESAHAVNENQLILRYLSDVKHVLEIRDLES--GALQHRLPIDITARRRDSILTPGIVYQCDLKNDPTQLKISVVPDFDR | |||||||||||||
5 | 1gxrA | 0.11 | 0.07 | 2.51 | 0.96 | CNFpred | SKVCFSCCSD----GNIAVWDLHTLVRQFQ-DGASCIDIS---------NDGTKLWTGGLDNTVRSWDLR--EGRQLQQHDF-TSQIFSLGYCPT--------GEWLAVGMES--------------------------------SNVEVLHVN-----DKYQLHLHESCVLSLKFA----GKWFVSTG--KDNLLNAWRTP-YGASIFQSKES--SSVLSCDISVDDKYIVTGSGD---------KKATVYEVIY------------------ | |||||||||||||
6 | 3a5zB2 | 0.14 | 0.02 | 0.62 | 0.42 | HHsearch-2 | GD-NAKWL-LDQAECIVTLWNGQPISVTPPNFVELEIV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 1n6fA2 | 0.10 | 0.09 | 3.52 | 0.80 | Neff-PPAS | TKVAFIHGTREGDFLGIYDYRTGKAEKFEENGNVFAMGVDRN---------GKFAVVANDRFEIMTVDLETGKPTVIERSREANSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPI-NVDPGDYRMIIPLESSILIYSVPVHGEFLLKYDVKTRKVTEVKNNLTDLRLSADRKKDDGKIYTFPLEKPEDERTVETDKRPLV- | |||||||||||||
8 | 4yguA1 | 0.06 | 0.02 | 0.78 | 0.30 | HHsearch | ------SEVRKVDAFSSIEITS-VGTIHFTQSDT------YSFRIEGREKYVKNTETTVKDGRLLIGFKD---GVTIWISAPD---LKEVEFT--GVGE-------FN---------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2qe8A | 0.13 | 0.11 | 3.81 | 0.76 | SP3 | GIVWLDNGNQSKSVPKLVAWDT-------LNNQSRVIYLPPP-ITLSNSFVND-LAVDLIHNFVYISDPAPDDKAALIRVDLQTGL-----AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEW--------------LY-----LSPHSTSYRIKSNLQLTDAELGYSEKPICDGISIDKDHNIYVGDL----AHSAIGVITSAD--RAYKLLVTDEKLSWTDSGSDGY--LYFDCNQLHHSAPLNAGENISAP | |||||||||||||
10 | 5ay6A | 0.10 | 0.09 | 3.28 | 0.84 | PROSPECTOR2 | KVGVNANLRSEQPVAAAVSYKVGT----AGSPSKTNVVDSATVVYSSTGIANPVSGNNEY--LVDIKENGVIVATGKVAYDAATNELVSSTIDYKGASPVTGSMT---TTRINAAGTTVNLADLGIVNASGADDAEVVAGKLYDPSTWSMSDYAK-----DNSKGVKPDFEVQIPLSDSK--------GGQRTVTLSMLKGPGPNQWYAELRAKPGD--LANNGNGQISTGIIEFTTDTGSLFGTTSPTAITIKSSGYIAPTVTPPAVQPPTPP | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |