>PF11904 (316 residues) RVDTSLLGFEHMTWQRGRRSFIFKGQAEAGALVMEVDHDRQVVHTETLGLALHEPEALLA AMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNV ELVTRTRTEHLSDQDKSRSKGGKTPFQSFLGMAQQHSSHSGAPVQQAASATNPTAISPDE YFDPSFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAK LRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPLSSVWVPAPSSALTTSGSPF PCEVDPTVFEVPEGYS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 | | | | | | | | | | | | | | | | |||||||||||||
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Seq | RVDTSLLGFEHMTWQRGRRSFIFKGQAEAGALVMEVDHDRQVVHTETLGLALHEPEALLAAMRPSEEHVASRLTSPIVSTHLDTRNVAFERNKCGIWGWRSEKMETVSGYEAKVYSATNVELVTRTRTEHLSDQDKSRSKGGKTPFQSFLGMAQQHSSHSGAPVQQAASATNPTAISPDEYFDPSFSLESRNIGRPIEMSSKVQRFKATLWLSEEHPLSLGDQVTPIIDLMAISNAHFAKLRDFITLRLPPGFPVKIEIPLFHVLNARITFSNLCGCDEPLSSVWVPAPSSALTTSGSPFPCEVDPTVFEVPEGYS | |||||||||||||||||||
1 | 5cqcA1 | 0.14 | 0.09 | 3.13 | 0.87 | SPARKS-K | HKLYSLFFDKSSAFYLGDDAYGFQSKKNDQ-QIFLFRPDSDYVAGYHVDAKSDAG--------WVNDKLDRRLSEKATQP--ATFILPFVEMPTDITKGVQHQVLLTISYDPTVYDSIG--------RDTYSESLSSYFKGYRTTCDEILTQSIEKAIKSTDFTLGKFTAYNTEGNC------------------------------------------GSYTFRTIKEVISSSAQHVQDIESCIKYRNLGVVDIESALTEGKTLP-------------------------------------------------- | |||||||||||||
2 | 3gf8A | 0.08 | 0.06 | 2.36 | 0.42 | FFAS-3D | ------------------VKFKYDYNEFADAELYVFDKNGKYLFKQAEE------GSALSTGNYLEVELPVGQITSLTPGVSTLTDLKLKLKREASLIYGEVINVNFDGTVHQTETINIVRFGFQSYTGSW---------TLDNDYDYEIIESNGHLGHDNSLLDDDV-----------LSFRPYYEQKDPATAYVDNTRLEDRKTRLVLTEKASGKRVFD---INLIDYLATNAEGKNSTQEYLDRQSN--YHIIFFLS-ESWLAVQIVVNGWVHRIQEENQ--------------------------------- | |||||||||||||
3 | 6e7oA | 0.14 | 0.06 | 2.18 | 0.32 | HHpred | -----------------------------EGRQVMYQQSSGRNSRALLSYDGLNQ---------------------RV--RVLDERK---RLFEYILLYKDGVMFQIDTKQCSKMTLTQ--------------------------------------------------PWDPLDIPQSTFE------DQYSIGGP------QEQITVQEWSDRK---YET--WIG-----I--------------YTVKDCYPVQETFTINYSVILSTRFFDIQLG-------------------------IKDPSVFTPPST-- | |||||||||||||
4 | 6djyD2 | 0.14 | 0.12 | 4.02 | 0.69 | MUSTER | --------------------------YRAVKDMF-----SAIEYLPDAIENIPTLTMKEQISPDSEAQNFFNNQPPYLNSIMNVNRQVFEAVKRGNIQVSTGSMEHL----CLCMHVKSGLIVG---RTVLIDDKVVLRRNFNAKMITCYVKAFAQLYGEGSLINPGLRVETEPAIDILKLFYGDKSLYIQGFGDRGIGRDKFRTIGCDILISDDQADYEDPNEEKFDDITDFVCYVTELVISNATVGL-----VKISMPTYYIMNKISSTLNNKFSNVAINIVKLSTQKPYTYGSTLTNKGYLRNPVCDV---YL | |||||||||||||
5 | 5w7zA | 0.10 | 0.04 | 1.65 | 0.67 | CNFpred | -------------------GVYLHIK---DKEFCSASTDGHRLSISWVTLEKQIKNFGVILPQKSAEEILKIVKDPKNI----NEDIEILLSS----------------NKIKFICNENTSMLSKLIDGTFPDYSTFIP-----------------------------------------------------------------SSSSKLVINR-------KMFADSIERIA----------IITVEKF---RAVKLSLS-RETLEISAVGE-------------------------------------------- | |||||||||||||
6 | 2pffB | 0.13 | 0.12 | 4.28 | 0.80 | HHsearch-2 | QFNKILPEPTERPFDKKSNSALFRAVGEGNQLVAIFGGQGNTYFEELRDLYQ-TYHVLVGDLKFSAETLSELIR-----TTLDAEKVFTQG--LNILEWLNPSN---TPDKDYLLSIPPLIGVIQLAHLGFTPGELRSYLGHSQGLVTAVAIAETDSWESFFLPENNEGVPSPSNLTQEDYVNKTGKQVEISLVNGAKNNLTLRKAKAPSGLDSERKLKFSNRFLPVASLLVPASDLINK--DLVKNNVSFNAK-DIQIPVYDTFDGS----DLRVLSLPVKWETTTQFGPTHRNKDGTGVRVIVAGTLDINPDDD | |||||||||||||
7 | 2bsgA | 0.08 | 0.07 | 2.80 | 1.23 | Neff-PPAS | -VLRNVEVLDKNIGILKTSLETANSDIKT--------IQINKKDISDLKTLTSEHTEILNGTNNTVDSILADIIRNDLLWIKRKHRIINNTDVITSQGIRLSLTIEVGNLREEL---------VYSRLNEIDTKQTTVESDISAIKTSISIITSVNTNTDNIASINLEIKQRLTVIETSIIKGQIKDNTTSILRANVSWLNQIVSLLNRVSTIETSVSGLNNAVQNLQVEIGNNKGQVVALNTLVNGTNPNGSTV-------EERGLTNSIKANETNIASVTQEVNTAKGNISSLQGDVQALQEAGYIPEAPRDGQ | |||||||||||||
8 | 2yzyA | 0.10 | 0.05 | 1.85 | 0.56 | HHsearch | ------------------------------------------------------QSAQ-----EILDRVEKNLS--------TPWQATVQGRI-E-----EEL-----LARVYALPQAR-----LFRVEFLKPGSL---EG-----NFTV--------ITEKEVWNLYLTNQLVISPQ--V-DLRLEGEVRLPEGMAKLVGSQGFAAMELYILKA-----------------------------------DPRPLRFVFLDEGKVLADLKVVEFK-R------------------------TNLTEAQLKRPKDA- | |||||||||||||
9 | 2z6bA | 0.09 | 0.07 | 2.66 | 0.84 | SP3 | -----------------------QGGEVGYDSSSNVIQDSNLDTAINPDDRPLSEIPTDDNPNMSMAEMLRRDEGLRLKVYWDTEGYPTIGIGHLIMKQPVRDMAQINK-----------VLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAG---------------DWEKAYKAGRLWYQQTKGRASRVTMIILTGNLES-------------------YGVEVKTPARSLLAMAATVAKSSDPADPPIPNDSRILFKEPVSYK | |||||||||||||
10 | 4dtdA | 0.10 | 0.09 | 3.15 | 0.84 | PROSPECTOR2 | TKATP--DFPT---HFPKSSLVVAPANSAQKFGYVKSAQGDALFLTKDNQGSYQRPPSLQDGKNYKAAVETRKQAPLAPIQSEDGRFVIEITNAKHVAAGNGISAESQGQTITTPSGQQATVGVAAKQKSLKSQFASLTSAENLDYLKTAELAKKFGIYINEWDPSEQITPNANGLTDPKVKNAWEILPRTKP----------------SKIVEILSKSDAKAVKHIKPQLQSRYSLSKNVFQYFQDGGEVAGINNATVGDKHSPELAILFE-FRTVPNELQSY--------------------------LPK--T | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |