>PF11863 (483 residues) VSRLINVTINLAALAAQGANLNTALFLGASPVIDTNERMRTYAEIDDVSADFGTDAPEYS AAALYFEQTPQPASLCIGRWAKTASAGQLNGGVLSVDQQAIANWTAITTGAFDISVDGVA KVVTGLDFSGQTNLNGVAAAIGAKLTGASIVWDGSRFIVTSATTGAESAVSYATVPDSGT DISAMLGLTSSLASTPANGIAAETPAAAAALFLDRFSNQFLGLAFADPDIEDDDHLAVAN LIEADQAHIYGITTQNPQAVDPTVTTDLASQLKALNLKYTVIQYSSANPYAVSSLLGRLL TVDFDANNTTITLMYKQEPGIVAETLTTTQANALQAKNCNVFVNYSNDTAIIQYGVTPSG IFVDSVYNAIWFKNAIQTAVYNLLYTSPTKIPQTDAGNATIAATISSVCDEAVTNGYLAP GVWNSAGFGAISQGQTLSKGYYIYTPAIASQSQADREARKSVSFQIAAKEAGAIHSADIA VTV |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VSRLINVTINLAALAAQGANLNTALFLGASPVIDTNERMRTYAEIDDVSADFGTDAPEYSAAALYFEQTPQPASLCIGRWAKTASAGQLNGGVLSVDQQAIANWTAITTGAFDISVDGVAKVVTGLDFSGQTNLNGVAAAIGAKLTGASIVWDGSRFIVTSATTGAESAVSYATVPDSGTDISAMLGLTSSLASTPANGIAAETPAAAAALFLDRFSNQFLGLAFADPDIEDDDHLAVANLIEADQAHIYGITTQNPQAVDPTVTTDLASQLKALNLKYTVIQYSSANPYAVSSLLGRLLTVDFDANNTTITLMYKQEPGIVAETLTTTQANALQAKNCNVFVNYSNDTAIIQYGVTPSGIFVDSVYNAIWFKNAIQTAVYNLLYTSPTKIPQTDAGNATIAATISSVCDEAVTNGYLAPGVWNSAGFGAISQGQTLSKGYYIYTPAIASQSQADREARKSVSFQIAAKEAGAIHSADIAVTV | |||||||||||||||||||
1 | 3lmlA | 0.10 | 0.08 | 2.92 | 1.10 | SPARKS-K | -PGIYTNFKAAAAERTKAGERGTVALPLAASWGAAKE-FVEINKEEDVEKKLGLSLQSFLLLRETLKL---AKTVLVYRL------NDGIKATAT------------LATDVVVTAK---------------YGGIVGNSI-----TIKVDEDSSKKDVTTYLNEVAVDKQVVGTASELID-SNYVSFKTTSTSELQQSSGTTDYTQFLVSAEGEYFD---TIAFPVSSSDVALKTSFVSFVKRRDKIKGVVANP-------------------ADYEGIINVRNGEPHQVVAWVAGADASASLKS------NTFVKYDGAIDPRLANDEAEEALQNGEFVLTFDADKAVYVEQDLNSLTRKNKISRILDGINNDTRRNILDAIKERKTDIPADENGVQFILS-QTAYLNELQDSGAI---------TNFDSTAD-------ITVSLNNNV----------DGFIVNQSIEDSGEKFYFTTEV | |||||||||||||
2 | 3lmlA | 0.09 | 0.07 | 2.78 | 1.28 | FFAS-3D | ----IYTNKAAAAERTKAGERGTVALPLAASWGAAKEFVE-INKEEDVEKKLGLAHQSFLLLRETLKL---AKTVLVYRLKATATLATDVVVTAKYGGIVGNSI------TIKVDENVVDSSKKDVTTYLNEVAVDKQVVGTASELIDSNYVSFKTTSTSELQQSSGTT----------------------LVGGTDQPVTNLDYTQFLVSAEGEYFD---TIAFPVSSSDVALKTSFVSFVKRRDVKIKGVVANP------------------ADYEGIINVRNGEPHQVVAWVAGADASASLKSNTF------VKYDGAATPRLANDEAEEALQNGEFVLTFDADKAVYVEQDLNSSSKFNKISRILDGINNDTRRNILDAIKEDANTDIPADENGVQFILSQTAYLNELQDSGAITNFDSTAD----------------ITVSLNNNVD--------GFIVNQSIEPVDSGEKFYFTTEV | |||||||||||||
3 | 6gkwA | 0.14 | 0.08 | 2.92 | 1.02 | HHpred | ----------LATTVKERSARGIIAVLKDAKA----LGLNEIHEKEDIPVDLSAE--NKEYINLALGNVNTPNKLLVYVIEG-----------------------------------------------------------------------------------------------------------------------EADIQTALDFLETKEFNYLC-P-K----AVEADKTAIKNWIIKLRKVKAVLGKV------------------VGNHEGIINFTTEDVDEFTSRVAGLIAGTPLSQ-----SVTYTKLSDVVIPK-TKVDAESKVNKGELILIKEAG-AIRIARGVNSAEEFIKIVDTLDIIHSDIRKVIIDDYI---GKVTNSYDNKCLLIVAIKSYLEELEKSALIESDSTIDFEA----QKSYKSKGV-----DLS-YTLQEINTGSKVFLKAKIKVLDA-EDIDLSIEI | |||||||||||||
4 | 3lmlA | 0.12 | 0.10 | 3.45 | 0.84 | MUSTER | I---TNF-KAAAAERTKAGERGTVALPLAASWGAAK-EFVEINKEEDVEKKLGLAHQSFLLLRETLK---LAKTVLVYRLNDGIKATATLATDVV--------VTAKYGGIVGNSI--TIKVDENVVDSSKKD--------------VTTYLNEVAVDKQVVGTADSNYVSFKTTSTSELQQSSGTTLVGG----TDQPVTNLDYTQFLVSAEGEYFD---TIAFPVSSSDVALKTSFVSFVKRRGVKIKGVVAN------PADYEGII-------NVRNGVTLRDGTILVVAWVAGADASAS-LKSNT-----FVKYDGAITPRLANDEAEEALQNGEFVLTFDADKAVYVEQDLNSSSKFRKISRILDGINNDTRRNILDAIKERNTDIP-ADENGVQFILSQTAYLNELQDSGAI--------------TNFDSTADITVSLNNNVDG-----------IVNQSIEPVDSGEKFYFTTEV | |||||||||||||
5 | 3lmlA | 0.09 | 0.07 | 2.68 | 1.60 | CNFpred | ---------------------GTVALPLAASWGAA-KEFVEINKEEDVEKKLGLSHQSFLLLRETLK---LAKTVLVYRLNDGKATATLAT-------------------DVVVTAKGNSITIKVDENVVDS-----------SKKDVTTYLNEAVDKQVVGELIDSNYVSFKTTSTSELQQSSGTTLVGGTDQ----PVTNLDYTQFLVSAEGE--YFDTIAFPVSS-SDVALKTSFVSFVKRMGVKIKGVVANMPA-----DYEGIINVR------NGVTLRD-EPHQVVAWVAGADASASM-----LKSNTFVKYDGAIDARLANDEAEEALQNGEFVLTFDADKAVYVEQDLNSLFRKNKISRILDGINNDTRRNILDAIKERNTDIPADENGVQFILSMQTAYLNELQDSGAITNFDS---------------ADITVSLNN-------------VDGFIVNQSIEPSGEKFYFTTEV | |||||||||||||
6 | 6gkwA | 0.12 | 0.08 | 2.77 | 2.12 | HHsearch-2 | ISFK-----ELATTVKERSARGIIAVLKDAKA----LGLNEIHEKEDIPVDLSAE--NKEYINLALGNVNTPNKLLVYVIEGE-----------------------------------------------------------------------------------------------------------------------ADIQTALDFLET--KEFNYLC-PK---AVEADKTAIKNWIIKLKVVKAVLGKV------------------VGNHEGIINFTTEDVDEFTSRVAGLIAGTPLS---QSV--TYTKLSDVVIPK-TKVDAESKVNKGELILIKEAG-AIRIARGVNSAFQKIKIVDTLDIIHSDIRKVIIDDYI---GKVTNSYDNKCLLIVAIKSYLEELEKSALIES-DSTVEI--DFEA----QKSYLKSKGDLS-YTLQEIKTGSKVFLKAKIKVLDA-EDIDLSIEI | |||||||||||||
7 | 3lmlA | 0.09 | 0.07 | 2.84 | 1.21 | Neff-PPAS | -----------AAERTKAGERGTVALPLAASWGAA-KEFVEINKEEDVEKKLGLSLQSFLLLRETLKL---AKTVLVYRLNDGIKATATLATDVVVTAKYGGIVGNSITIKVDENVVDSSKKDVTTYLNEVAVDKQVVGTASELIDSNYVSFKTTSTSELQQSSGTTLVGGTDQP------------------------VTNLDYTQFLVSAEGEYFD---TIAFPVSSSDVALKTSFVSFVKRRDVKIKGVVANPADYEGIINVRNGVTLRDGTILE---------PHQVVAWVAGADASASLK------SNTFVKYDGAIDPRLANDEAEEALQNGEFVLTFDADKAVYVEQDLNSKFRKNKISRILDGINNDTRRNILDAIKERKTDIPADENGVQFILS-QTAYLNELQDSGAITNFD--------------STADITVSLN----------NNVDGFIVNQSIEPVDSGEKFYFTTEV | |||||||||||||
8 | 6gkwA | 0.13 | 0.08 | 2.88 | 2.91 | HHsearch | GLPSINISKELATTVKERSARGIIAVLKDAKA----LGLNEIHEKEDIPVDLSAE--NKEYINLALGNVNTPNKLLVYVIEGE-----------------------------------------------------------------------------------------------------------------------ADIQTALDFLET--KEFNYLC-PK---AVEADKTAIKNWIIKLKVKVKAVLGKV-----------------VGNHEGIINFTTEDVDEFTSRVAGLIAGTPLS---QS--VTYTKLSDVVIPK-TKVDAESKVNKGELILIKEAG-AIRIARGVNE-FQKIKIVDTLDIIHSDIRKVIIDDYI---GKVTNSYDNKCLLIVAIKSYLEELEKSALIES-D-STVEI-DFEAKSLKSKGV-----DLS-YTLQEIKTGSKVFLKAKIKVLDA-EDIDLSIE- | |||||||||||||
9 | 6gkwA | 0.14 | 0.09 | 3.06 | 1.29 | PROSPECTOR2 | GLPSINISFELATTVKERSARGIIAVLKDAK----ALGLNEIHEKEDIPVDLS--AENKEYINLALGNVNTPNKLLVYVI-----------------------------------------------------------------------------------------------------------------------EGEADIQTALDFLETKEFNYL------CPKAVEADKTAIKNWIIKKVKVKAVLGKVV------------------GNHEGIINFTTESVDEFTSRVAGLIAGTPLSQSVT-----YTKLSDVVDIPKTKVDAESKVNKGELILIKEAGAIRIARTAEKGEFQKIKIVDTLDIIHSDIRKVIIDDY---IGKVTNSYDNKCLLIVAIKSYLEELEKSALIESDSTVEIDFEAQKS-------YLKSKGVDLSYTLQEIKEANTGSLKAKIKVLDA-EDIDLSIEI | |||||||||||||
10 | 6gkwA | 0.12 | 0.07 | 2.65 | 1.10 | SAM | --------KELATTVKERSARGIIAVLKDAKA----LGLNEIHEKEDIPVDLSAE--NKEYINLALGNVNTPNKLLVYVIEGE-----------------------------------------------------------------------------------------------------------------------ADIQTALDFL--ETKEFNYLC--PKA--VEADKTAIKNWIIKLRIVKVKAVLGKV----------------VGNHEGIINFTTEDVDEFTSRVAGLIAGTPL---SQSVTYT--KLSDVVPK--TKVDAESKVNKGELILIKEAG-AIRITAEKGE-FQKIKIVDTLDIIHSDIRKVIIDDYI---GKVTNSYDNKCLLIVAIKSYLEELEKSALIES-DSTVEI-------FEAQKSYLKSKGVDLSYTLQEIKTGSKVFLKAKIKVLDA-EDIDLSIEI | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |