>PF11843 (378 residues) QGRLRKLERMGLAEEVDPVRWRLDDELEATLRRTGERGDIIKTMHRELTGKGLARSAADY LVHDRREEPSPPVVGRLVARGLADEINDRHYLIVDGVDGKSHWIDIGKGELTEPTPDGCI VRVTSRDTKPRQVDRTIADIATAHGGRYSVDMHLKHDAFATESFAETHIRRLEAIRRSTG GVEREPNGTWIIAPDHLDRVAEYERLRARVEPVIVEKLSSMPLERQVSFEGATWLDRNLV AERPEPLRNSGFGHEVREAHARRRQWLIAQGLAHEEQDRVVYRANMISILRQRELNRVAG QLSDQLGLSYAEAQPGERIEGTLRRSVELASGKYAVIDKSREFTLVPWRPVLDRYIGKEV SGIMRGEGVSWTIGRQRS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | QGRLRKLERMGLAEEVDPVRWRLDDELEATLRRTGERGDIIKTMHRELTGKGLARSAADYLVHDRREEPSPPVVGRLVARGLADEINDRHYLIVDGVDGKSHWIDIGKGELTEPTPDGCIVRVTSRDTKPRQVDRTIADIATAHGGRYSVDMHLKHDAFATESFAETHIRRLEAIRRSTGGVEREPNGTWIIAPDHLDRVAEYERLRARVEPVIVEKLSSMPLERQVSFEGATWLDRNLVAERPEPLRNSGFGHEVREAHARRRQWLIAQGLAHEEQDRVVYRANMISILRQRELNRVAGQLSDQLGLSYAEAQPGERIEGTLRRSVELASGKYAVIDKSREFTLVPWRPVLDRYIGKEVSGIMRGEGVSWTIGRQRS | |||||||||||||||||||
1 | 5nd1A | 0.15 | 0.14 | 4.71 | 0.61 | SPARKS-K | FGVLSRMVMHNSAQELGENDWELAGEVAAWLAQLTGRERVFSEALARLVDPDV--GCVHVKIDGVTQNAAENARVHYATRDPMSWLDDEHYTLWKGRHSKVHLTIQSTTAATAEPRADSIVYYLKGFEGLGACAEFLLANS--RFGHHSADVHEAAYAGIPATFTKAQLAATYALMRRYDISE-------RTCHFAITTIGHMVA------QTAVRDLSPLPF--RVNL-SPFLVQGVQFNDTEGSVSDMGIGKELLTATYALGAMASLAHVCEEEMSAIEVSRFT-------DVHTVATDLFRELGGSEVTHSSQEALYGPFVD-VQLARIRSSFVRDGASRQMM--DASALIKHAQNVTYDWPQNEIALPVPSTIT | |||||||||||||
2 | 5w1eA | 0.16 | 0.13 | 4.41 | 0.76 | FFAS-3D | --RTATLARMGYVRLDG-RDVVLAPRLMELGNAYLAALRLPALLSARADG-------------------------------LADELDESVSLAVGDRDGIRFIHQATRRRAMSSFRIGDLLPAERTAPGAEWTASDWHRWRERRAADPGDHSFPAVPPREPGAPGEDFARRAAKAAADGWAVRDPGTGRVALLPRLRAAVAAMEDDLRAAPAPEPGPPPAGLSKQELGREFVESLARGLTGEGRSALTLTQVAQATRATARRALLTHARAGLVAPAGHTFTLTPRVLSPLSRTSLPEIATALAERVHEEIQYTARASALRGYALVDEELEAGLRAIA--------VP----VRDRTGRVVAALN-------------- | |||||||||||||
3 | 5tjjA | 0.17 | 0.08 | 2.79 | 0.35 | HHpred | -RVLRTLEREDFVSYDPSRRYSLGPYLIPLGARAADLNDVYAHALAELHQV-------------------------------AAHTG-TAVLVKRLRDDRVIYIGSAEPPGRIAVSVGQQFPVYGA-----AFGRCFLRVLREGLKAYT---------PNSITDEEEYVRLLQEVREK-GYAVSHGPGISAV--------------------------------------AVPVFNQQVDL----VLSCLT---------------------------TSVIQGEDVERA-VKALKESAAKVSAWSGYQ--------------------------------------------------------------------- | |||||||||||||
4 | 5kowA | 0.15 | 0.14 | 4.79 | 0.62 | MUSTER | ARSIEVMDQRGLGEQFRVGGF-FAGLAAEWPADLDPQVVTERLLTEHATELGAERRGCEVAGLDQDAD------GVTAE--LADGTRLRAYLVGDGGRSTV---LLGVDFPGEPTRVETLLADVRIDVPVETLTAVVAEVRKTQDGFFRLIVPAQGLSADRAAPLDELKRCLHATAGTDFGVHSPR--WLSRFGDATRLAERY-----RTGRVLLHIHPPTGIQDAFNL--GWKLAAAIGGWAPPDLLDS-YHDERHPVAAEVLDNTRAQMLLSLDPGPRAVRRLMAELVEFPDVNRHLIEKITAIAVRYDLGDGHDLV-GRRPGRLYMRGGRGLLLDRTGRLSVSGWSDRVDHLADPHVAWVGEDQDLLW-FGAAT- | |||||||||||||
5 | 5w1eA | 0.13 | 0.11 | 3.74 | 0.87 | CNFpred | DRLTATLARMGYVRLD-GRDVVLAPRLMELGNAYLAALRLPALLSARAD-------------------------------GLADELDESVSLAVGDRDGIRFIHQATRRRASLSFRIGDLLPAER-----TAPGPLFAAEWTA-SDWHRWRERRAADPGDHPAVPEDFARRAAKAAADGWALDDQLPGLVAVSVPVRDP----------RVACVASVVSHHTAPDLRAAL-VAAMEDDLRA-GPPPAGLALWTGASKQ-VESLARGLTVLTAFGEGRSALTLTVAQATGLARATARRALLTHARA---GLVAPAAGHTFTLT-PRVLSL---GFPPLSRTSLPEIQPHLTALAERVHESASLAVLA------------ | |||||||||||||
6 | 4b4tL1 | 0.08 | 0.02 | 0.82 | 0.36 | HHsearch-2 | -----------------------HRRYDDQLKQRRQNIRDLEKLYDKTEND--------IKAL----QSIGQLIGEVMKEL------SEEKYIVKASSGPRYIVGVRNSVDRSKLKKGVRVTLDITTL---------------------------------------------------TIMRILPR----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
7 | 5kowA | 0.14 | 0.12 | 4.26 | 0.79 | Neff-PPAS | -GLLERFLAHGEQFRVGGFFAGLDLDTAHSYVLAIPQVVTERLLTEHATELGRGCEVAGLDQDAD-----------GVTAELADGTRLRARYLVGCDGGRSTVRRLLGVDFPGEPTRVETLLADVRIDVPVETLTAVVAEVRKTQLRFGIVPAQGLSADRAAPTLDELKRCLHATAGTDFGVHSPRWLSRFGD--------------------ATRLAERYRTGRVLDAFNLGWKLAAAIGGWAPPDLLDSYHDERHPVAAEVLDNTRAQMLLSLDPGPRAVRRLMAELVEFPDVNRHLIEKITAIAVRY-DLGDGHDLVGRRLRDIPLTEGRLYERMRGGRGLLLDRTGRLSVSGWSDRVDHLADPGAA----LDVP | |||||||||||||
8 | 3fp9A1 | 0.22 | 0.03 | 1.08 | 0.37 | HHsearch | ----------------------------------------------------------------------PSGYGVLLAT------HDDDTVDVFT-SGRKMRLTCSPNIDAASLKKGQTVRLNEALT----------------------------------------------------VVEAGTF----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- | |||||||||||||
9 | 2qenA | 0.08 | 0.05 | 2.11 | 0.66 | SP3 | SPFQKFQSKFK----ISLNLKFLTLEPRKL-----SLREVFRELNDLGEELGEFIEAQYLRFYGSRGGKELALFAYAYDS------LPNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVEDGIPGWLVVFGVEYLRNGDFGRAMK-------RTLEVAKGLIMGELEELRRRSPRYVDI-----LRAI--ALGYN--RWSLIRD---YLAVKGTKIP-EPRLYALLENLKKMNWIVEEDNTYKIADPVVATVLRI------------------------------------------------------------------------------------- | |||||||||||||
10 | 3i3lA | 0.13 | 0.12 | 4.31 | 0.89 | PROSPECTOR2 | HMTGLTLHKLGHAFPRYRVGESLLPGTMSILNRLGLQEKIDAQNYVKKPSWGQDQAPWTFSFAAPAPWVFDHAVQTVHETDVDLSDPDRVVLTVRRGGESAVWSYFKLKDPFEGDLKGTTYSITFEDG--------WVWMIPIKDDLYSRSKSAEVREQGADAFYSSTLAKCAKAMDILGGAEQVDEVRIVQHGDEKDAVHAWYNRTYREAYEQYHQFLASFYTFASFTEPDSEFWRKRRITESDDDR-----LTRKKWFRDRASTMIAIGRHQRPELSDDFSEAELNPARVRWISDLTKRLN---SITRFKWTGGKAVLKQHQREVLANGEGLDMAQYPMDDEARQIFQDLAEEEAGLLTGYDAQGEKVFVQGRLHG | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |