Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40
| | |
| Seq | LIIVAVLMAISLAAGAMIGYGVIGDGNPFDVFQPSTWQHIIDIVEK |
1 | 3dl8C | 0.06 | 0.04 | 1.87 | 1.33 | SPARKS-K | | ISVIIFSLAIGVYLWILDLTFTKIISFILSLR-------------- |
2 | 4xdnA4 | 0.07 | 0.07 | 2.70 | 0.44 | FFAS-3D | | VKMISLLNCYTVQAARV---SRCSGDKQGELVEQKVWLQVEKLLQE |
3 | 2m0qA | 0.12 | 0.11 | 3.87 | 0.31 | HHpred | | YLMVMIGMFSFIIVAILVSTVKSHSNDPYHQYIVEDWQEKYKS--- |
4 | 6a69A | 0.11 | 0.11 | 3.93 | 0.69 | MUSTER | | GLLMSAITVIILVLYFVIDTFWVQKRPWLAECTPIYIQYFVKFFII |
5 | 5a22A | 0.10 | 0.09 | 3.24 | 0.59 | CNFpred | | FLLMVKDVIIGRMQTVLSMVCRI-----DNLFSEQDIFSLLNIYRI |
6 | 6mu1A | 0.26 | 0.26 | 8.04 | 0.33 | HHsearch-2 | | IILTAALALILVYLFSIVGYLFFKDGGVGDVLRLFAARVIYDLLFF |
7 | 3vibA2 | 0.18 | 0.17 | 5.67 | 0.80 | Neff-PPAS | | -KETAVIFIKSTLDGLIWRWFSSGESFDLGKTAPRIIGIMMDNLEN |
8 | 2ndjA | 0.12 | 0.11 | 3.80 | 0.50 | HHsearch | | YILFVMFLFAVTVGSLILGYTRSRKSDPYHVYIKNRVSM----I-- |
9 | 3ecpA | 0.09 | 0.09 | 3.35 | 0.72 | SP3 | | LERMVSILSFVAVRLLQLRESFTPSQSAETVLTPDECQLLGYLDKG |
10 | 4bwzA1 | 0.11 | 0.11 | 3.93 | 0.38 | PROSPECTOR2 | | GAEHLLEIFYLLLAAQVCAFVLVGPALLGLVHEGEILEFLAELVRL |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|