>PF11700 (525 residues) TSKKELIGWYSYGWAAEVFTVCAMGSFLPITLEQMARERGVLFSDKTTPCTATWKTPENL HANWQNTKAAVSGQCIVYILGAEVNTASFAMYTFSVSVFIQAILIISMSGAADHGSYRKT LLVTFAAIGSISTMFFLSVASKLYLLGGLFAIVANTCLGASFVLLNSFLPLLVRYHPSLL KHANPTESDVQATAMDGSRTPLLQADGVSPDEAPLSDASKELILSTQISSYGIGIGYISA VLLQGLCILVIVRTHQTTFSLRVVLFLIGLWWLVFTIPAAFWLRPRPGPPLLRMQDGKAQ QSWLGYMAFAWKSLGRTAMRTRHLKDLLLFLASWFLLSDGIATVSGTAVLFAKTQLNMEP AALGMINVITMISGVLGAFSWSYVSRALDLRASQTIIACILLFELVPLYGLLGFIPAVKN LGYLGLQRPWEMFPLGVVYGIVMGGLSSYCRSFFGQLIPPGYEASFYSLYAITDKGSSIF GPAIVGFITDRYGEIRPAFFFLAVLILLPLPLMLLVDADRGKRDA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 380 400 420 440 460 480 500 520 | | | | | | | | | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | TSKKELIGWYSYGWAAEVFTVCAMGSFLPITLEQMARERGVLFSDKTTPCTATWKTPENLHANWQNTKAAVSGQCIVYILGAEVNTASFAMYTFSVSVFIQAILIISMSGAADHGSYRKTLLVTFAAIGSISTMFFLSVASKLYLLGGLFAIVANTCLGASFVLLNSFLPLLVRYHPSLLKHANPTESDVQATAMDGSRTPLLQADGVSPDEAPLSDASKELILSTQISSYGIGIGYISAVLLQGLCILVIVRTHQTTFSLRVVLFLIGLWWLVFTIPAAFWLRPRPGPPLLRMQDGKAQQSWLGYMAFAWKSLGRTAMRTRHLKDLLLFLASWFLLSDGIATVSGTAVLFAKTQLNMEPAALGMINVITMISGVLGAFSWSYVSRALDLRASQTIIACILLFELVPLYGLLGFIPAVKNLGYLGLQRPWEMFPLGVVYGIVMGGLSSYCRSFFGQLIPPGYEASFYSLYAITDKGSSIFGPAIVGFITDRYGEIRPAFFFLAVLILLPLPLMLLVDADRGKRDA | |||||||||||||||||||
1 | 4zowA | 0.09 | 0.07 | 2.65 | 2.45 | SPARKS-K | RLGRQALLFPLCLVLYEFSTYIGNDMI-QPGMLAVVEQYQAGID--------------------------------------------WVPTSMTAYLAGGMFLQWLLGPLSDRIG-RRPVMLAGVVWFIVTCLAILLA-QNIEQFTLLRFLQGISLCFIGAVG-YAAIRESFE-----------------------------------------------EAVCIKITALMANVALIAPLLGPLVGAAWI-----HVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKLSL---------------KELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRT------VRSLIIMGGWPIMIGLLVAAAATVISS----HAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDMSK-GTVSAAMGMLQMLIFTVGIEISKHAWLNGGNGLFNLFNLVNGILWLSLMVIFLK-------- | |||||||||||||
2 | 1pv6A | 0.12 | 0.09 | 3.28 | 3.05 | FFAS-3D | -KNTNFWMFGLFFFF-YFFIMGAYFPFFPIWLHDIN-----------------------------------------------HISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNLVGSIVGGIYLGFCFNAGAPAVEAFIEKVSRRSNFE------------------------------------------FGRARMFGCVGWALGASIVGIMFTINN---------QFVFWLGSGCALILAVLLFFAKTDAPSSATVANAVGANHSAFS----------LKLALELFRQPKLWFLSLYVIGVSCTYDVFDQQFANFFTSFFEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSS---------------FATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFFFKQLAMIFMSVLAGNMYESIG-FQGAYLVLGLVALGFTLISVTLSGPGPLS-- | |||||||||||||
3 | 4zowA | 0.10 | 0.07 | 2.70 | 3.10 | HHpred | RLGRQALLFPLCLVLYEFST-YIGNDMIQPGMLAVVEQYQAGI--------------------------------------------DWVPTSMTAYLAGGMFLQWLLGPLSDRIGRRPVMLAG-VVWFIVTCLAILL-AQNIEQFTLLRFLQG-ISLCFIGAVGYAAIRESFEEA-----------------------------------------------------VCIKITALMANVALIAPLLGPLVGAWIHVLPWEGMFVLFAALAAISFFGLQRAMPETATRIGEKL----------S-----LKELGRDYKLVLKNGRFVAGALALGFVSLPLLAWIAQSPIIIITGEQLSSYEYGLLQVPIFGALIAGNLLLARLTSRRT--VRSLIIMGGWPIMIGLLVA--AAATVI------SSHAYLWMTAGLSIYAFGIGLANAGLVRLTLFASDM-SKGTVSAAMGMLQMLIFTVGIEISKHAWLNGG-NGLFNLFNLVNGILWLSLMVIFLK------- | |||||||||||||
4 | 6e9nA | 0.13 | 0.10 | 3.61 | 1.72 | MUSTER | --RRRYLTLVMIFITV--VICYVDRANLAVASAHIQEEFGIT--------------------------------------------KAEMGYVFSAFAWLYTLCQIPGGWFLDRVGSR-VTYFIAIFGWSVATLFQGF-ATGLMSLIGLRAITGIFE--PAFPTNNRMVTSWFP-----------------------------------------------EHERASAVGFYTSGQFVGLAFLTPLLIWIQEM-----LSWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPLTAKDWKLVF-HRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTND--------PMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYG-FAPALVYISAVALIGALSYILLVGDVKR--- | |||||||||||||
5 | 1pw4A | 0.11 | 0.09 | 3.09 | 2.27 | CNFpred | DPTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSR--------------------------------------------GDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVATSSI-AVMFVLLFLCGWFQGMGWPPCGRTMVHWWS-----------------------------------------------QKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWF----NDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND------------KQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKV-FRGNRGATGVFFMTLVTIATIVYWMNP---------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGLGGSVAASAIVGYTVDFF-GWDGGFMVMIGGSILAVILLIVVMIGEKRRHE | |||||||||||||
6 | 1pw4A | 0.11 | 0.09 | 3.08 | 1.09 | HHsearch-2 | DPTYRRLRWQIFLGIFFGYAAYLVRKNFALAMPYL-VEQGFSRGD--------------------------------------------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG-LILAAAVMLFMGF-VSSIAVMFVLLFLCG-WFQGMGWPPCGRTMVHWWSQK-----------------------------------------------ERGG------IVSVWNCAHNVGGGIPPLLFLGMAWNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------K--NDTAK--QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVG--NRGATVFFMTLVTIA----T-IVYWMN------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILVVMIGEKRRHELV | |||||||||||||
7 | 6e9nA | 0.12 | 0.09 | 3.25 | 2.33 | Neff-PPAS | -----RRYLTLVMIFITVVICYVDRANLAVASAHIQEEFGIT--------------------------------------------KAEMGYVFSAFAWLYTLCQIPGGWFLDRVG-SRVTYFIAIFGWSVATLFQGFA--TGLMSLIGLRAITGIFEAPAFPTNNRMVTSWF-----------------------------------------------PEHERASAVGFYTSGQFVGLAFLTPLLIWIQEML-----SWHWVFIVTGGIGIIWSLIWFKVYQPPRLTKGISKAELDYIRDGGGLVDGDAPLTAKDWKLVF-HRKLIGVYLGQFAVASTLWFFLTWFPNYLTQEKGITALKAGFMTTVPFLAAFVGVLLSGWVADLLVRKGFSLGFARKTPIICGLLISTCIMGANYTND--------PMMIMCLMALAFFGNGFASITWSLVSSLAPMRLIGLTGGVFNFAGGLGGITVPLVVGYLAQGYG-FAPALVYISAVALIGALSYILLVGDVKR--- | |||||||||||||
8 | 1pw4A | 0.11 | 0.09 | 3.07 | 1.76 | HHsearch | DPTYRRLRWQIFLGIFFGYAAYLVRKNFALAMPYL-VEQGFSRGD--------------------------------------------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG-LILAAAVMLFMGF-VSSIAVMFVLLFLCG-WFQGMGWPPCGRTMVHWWSQK-----------------------------------------------ERGG------IVSVWNCAHNVGGGIPPLLFLGMAWNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY------K--NDTAK--QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVG--NRGATVFFMTLVTIA----T-IVYWMN------PAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILVVMIGEKRRHEQ- | |||||||||||||
9 | 1pw4A | 0.11 | 0.09 | 3.09 | 2.51 | PROSPECTOR2 | FKTYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYLVEQGFSRGD--------------------------------------------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG-LILAAAVMLFMGFATSSIAVMFVLLFLCG-WFQGMGWPPCGRTMVHWWSQK-----------------------------------------------------ERGGIVSVWNCAHNVGGGIPPLLFLMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKNDTAK----------QIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIV----------YWMNPAGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYGGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVILLIVVEQLLQELVP | |||||||||||||
10 | 1pw4A | 0.11 | 0.09 | 3.06 | 3.26 | SAM | -TYRRLRWQIFLGIFFGYAAYYLVRKNFALAMPYL-VEQGFSRGD--------------------------------------------LGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAG-LILAAAVMLFMGF-VSSIAVMFVLLFLCG-WFQGMGWPPCGRTMVHWWSQK-----------------------------------------------------ERGGIVSVWNCAHNVGGGIPPLLFLGMAWNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEYKND-----------AKQIFMQYVLPNKLLWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVG--NRGATVFFMTLVTIA----TIVYWMN--------AGNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGSVAASAIVGYTVDFFG-WDGGFMVMIGGSILAVIIVVMIGEKRRH--- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |