Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | NIILSFFILAIFSNVKAATFQDANDNNPHSIAYASVAQPIVIFERRDKNHTEYLDIINNIFRDESENIKYAYQCNNHHWVITDFDIYIDNSSRSLKKKLTEKGKEGFIKGSAYFIAYIKDNIIYLISQHMHKYDFERNYYNDLKLLGKDLKTLIYDEFDNDLKQDLIKYEIGPENEKYHKMAKEFLEVLVNNSSMRFKGYFIKIREDGNYMDACKTDHIYFDININKNYAKFDYRYKYLKPEVTEFL |
1 | 2ebfX | 0.11 | 0.10 | 3.62 | 0.59 | SPARKS-K | | SESTADLIRFALQDVISAPFRGYAGAIPEAIDF----PVKYVIEDNEGSNSALLPGLLRESQSKGMLSKCRIIEN---------SLYIGHSYEEMFYSISPYSNQVGGPYE-LYPFTFFSMLQEVQLGFEQAFATRNFFNTLVSDRLSLMENTMLLTESFDYTPWDAIYGDINYDEQFAAMINERIEKCMNTYR----GVAFQNSSKNNLTTFINGLTEIAISDLPY---------DIVQQEISQFL |
2 | 2wzkA2 | 0.13 | 0.05 | 1.69 | 0.64 | FFAS-3D | | ----------------------------------------------------------------------------------------RNETEKLHLMFSDKVPNGIEPMLKDLEEHIISAGLADMVAAAETITTDEKYREQLDTLFNRFSKLVKEAFQD--------------DPRFLTARDKAYKAVVNDATIF--------------------------------------------------- |
3 | 2vx8B | 0.17 | 0.08 | 2.66 | 0.30 | HHpred | | ----------------GDSAPTLHLNKGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSNNKLTYSHGNFHYICQDRIVYLC---------ITDDD---FERSRAF--SFLNEVKKRFQTTYGSPYAMNSEFSSVLAAQ----------------------------------------------------------------------------------------------------- |
4 | 2g47B3 | 0.11 | 0.09 | 3.38 | 0.61 | MUSTER | | --------EVQLPDRGWFVYQQRNEVHNN--CGIEIYYQTDMQSTS---ENMFLELFCQIIS-TKEQLFSGPRRANGIQGLR-FIIQSEKPPHYLESRVEA--LITMEKSIEDMEEAFQKHIQALAIRRLDKP---KKLSAECAKYWGEIISYNFDRDNTEVAYKTLTKE------DIIKFYKEMLAV---DAPRRHKVSVHVLAREMDSCPVVGEI----NLSQAPALPQPEVEFKFPLVKPHINF |
5 | 3mx9A | 0.10 | 0.07 | 2.73 | 0.61 | CNFpred | | NKEFLLYLAGFVDGDGSIIAQINPNQSSKFKHRLRLT-FYVTQKTQ---RRWFLDKLVDEIG----VGYVRDSGSVSQYVLSEI-----KPLHNFLTQLQP-----FLKLKQKQANLVLKIIEQLPSAK--------ESPDKFLEVCTWVDQIAALNDSKTRKTTSETVRA-------NKEFLLYLAGFVDS----DGSIIAQIKPRQ-SNKFKHQLSLTFAVTQKT-------------------- |
6 | 1vt4I3 | 0.17 | 0.09 | 3.05 | 0.50 | HHsearch-2 | | --------------------------------------------EYAHRSIVDHYNIPKTFD--SDDLIPP----------------------YL---------------DQYFYSHIGHHLKNPERMTLFRMVFLDFRFL-EQKIRSILNTLQQLKF--------YKPYICDNDPKYERLVNAILDFLPKIEENL---------ICSKYTDLLR---------IALM-A---EDEAIF-EEAHKQV |
7 | 4jc0A2 | 0.12 | 0.11 | 3.99 | 0.64 | Neff-PPAS | | -SLRSRSIEDITREVEDLLKEGKK-------EIILVAQDTTSYGIDLYRKQALPDLLRRLNSLNGEFWIRVMYLHELDKVVKYFDVPVQHGSDKILKLMGRTK---SSEELKKMLSSIRERFPDAVLRTSIIVGFPGETEEDFEELKQFVEEIQFDKLAFNLKEKVDPEMAKRRQEELLLLQAEISNSRLDRFVGKKLKFLVEGKEG-------KFLVGRTWTEAPEVDGVVFVRGKGKIGDFLEVV |
8 | 2vx8B | 0.16 | 0.09 | 2.82 | 0.38 | HHsearch | | ----STPEVKPLKSLLGDSAPTLHLNKGMAILFAVVARGTTILAKHAWCGGNFLEVTEQILAKIPSNNKLTYSHGNFHYICQDRIVYLC---------ITDDD---FERSRAF--SFLNEVKKRFQTTYGSPYAMNSEFSSVLAA-------QL--------------------------------------------------------------------------------------------- |
9 | 2z6bA | 0.07 | 0.07 | 2.82 | 0.51 | SP3 | | N------VLNQGGEVGYDSSSNVIQDSNLDTAINPDDRPLSEIPTDDNPNMSMAEMLRRDEGLRLKV---YWDTEGYPTIGIGHLIMKQPVRKVLSKQVGREITGNPGSITMEEATTLFERDLADMQRDIKSHSKVGPVWQAVNRSRQMALENMAFQMGVGGVAKFNTMLTAMLAGDWEKAYKAGRDSLWYQQTKGRASRVTMIILTGNLESYGVEVKTPARSL-LAMAATVAKSSDPADPPIPNDS |
10 | 5xn7A1 | 0.15 | 0.13 | 4.22 | 0.80 | PROSPECTOR2 | | NLLVQ--------------------------EGFEVRSTILLDNPQQKSIERFILAN----FDNFEQPDELFLVDNKVLSHHDGRTRIANVELSVTELLDAAHVSGKVRGESY--QQVIDALTEYHASTAEHADYELTSVEKLLNLRKQVEGYVLGHPD----------SGRVQANALLNQVNSRLEAVSSEQSIKAHDSFSHLYDQLDNANLKESKHLYLDFVTKGKGNLANIDKLGGSDAVLEKV |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|