Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MAPSVALVKVASNTVLPIRIFINRKQLLQNNSKDTVFHAPLLSNNSIVCIKSPSTRIYLSNHDMQNLTNDIETEILLIVHELTSPELMQDVLRKIKIGQSMDWQKDVMPRIFPSETEPLVVSHIQSITRIAKFKYKLHFKHNWELNIFIDNIRALTHIRAYLMFKNDLSIIPPVVGLHSKSKLLLHEQMETEKPPQVLQEDDEPSIPNYDEAAEIQEEQKPELKFKYSPVVSLGECINVHVL |
1 | 1p35A | 0.12 | 0.10 | 3.64 | 0.68 | SPARKS-K | | ------------------CVIFPV----EIDVSQTIIRDCQVDKQTINKIMNTQLMFNISTRKNNNLRDRIKSKVDEQFDQLELKSKFAKILKSHDYTDIEAYEKYCLPKLVDERNENGSNQVLSFEYNPIGNKVIVPFDTGYDVVAYVDSGEQFEEFVQSLILPSSEKVLYYNEASKNKSMIYKALEFTTE--------------SSWGKSEKYNDKKSKVLYVKLHNVTSLNKNVILNTI |
2 | 5a1wH | 0.13 | 0.13 | 4.43 | 0.52 | FFAS-3D | | MVLLAAAVCTKAGKAIVSRQFMTRTRIEGTGKQHTFVETESVEKLYMVLITTKNSNILEDLETLRLFSRVIPEALEENEISEHCFDLIFAFDEIVALGYRENVNLAQIRTFTEPPINMKIEEKITLTCGRDGGLQNMELHGMIMLRISDDKFGRIR-----LHVENEDKKGVQLQKLFTAESLIGLKNPEKSFPVNSLQTTEESFIPLTINCWPSESGNGCDVNIEYELQEDNLELNDVVI- |
3 | 2rsxA | 0.13 | 0.06 | 2.16 | 0.27 | HHpred | | ---------------------LSQKQLALSAR--EHFWNTMSGPSGTFEYQNLQYV-YMC-SDLG-----TKAKAVNYLTPIFTKTAIEKGFKDYDGDNLLNWKKSTAKLISKKGSTITYEFPTLDGSPSAKRKVTFVKNKKWKVNQF---------------------------------------------------------------------------------------------- |
4 | 5g5sA1 | 0.12 | 0.11 | 3.95 | 0.66 | MUSTER | | VTYKINAYKIKEE-FIPKEVHFYR--IKSFVNEAFNFYR-FVNFYGGMIINKKDKSFVLPYK-VDNIPIDIEYIKSLKLEYVKPEIAEKLVRGYLK---SVHKIEPELSRIIKENIKVESYCEYEVKKHDGDYYLILNFRHTASIYMDELDSYILKELQSYWRLSNE-NKGKIINEIAKKLRFIDNTPKELE----FMKFRKNNKYKVFTSDYRIGSVFGNDGIFLPHKTPFGSNPVKL--- |
5 | 4r04A | 0.14 | 0.10 | 3.40 | 0.60 | CNFpred | | -AEDINVFMKDDINTITGKYYVD-----NNTDKSIDFSISLVS-KNQVKVN----GLYLNESVYSSYLDFVKNSD-------NTSNFMNLFLDNISFWKLFGFEN-----------INFVIDKYFTLVGKTLGYVEFICDKNIDIYFGEWKT-----SSKSTIFSGN------------GRNVVVEPI------------------YNPDTGEDI----STSLDFSYEPLYGIDRYINKVLI |
6 | 4cp0A | 0.11 | 0.08 | 2.95 | 0.49 | HHsearch-2 | | -AHYPRPEGCSSPVGLHMDLYNY----------------PYLYVKQ---------------------CWN---P----EY--QDPNFPRYKYGSFSDHVKISWDHNEKPRLPTAY-NYPITFSNFTMVLSG--YFKPKSTGLYKFEIHADDFILFN-FGAFECCNRENFGPYVAYMWPNEDQELLFEDSYYRDYHSKFVGYPPN-------TEEITYD-FDGYLYML--DDTGNEC------ |
7 | 1p35A | 0.11 | 0.10 | 3.71 | 0.82 | Neff-PPAS | | DVSQTIIRDCQVDKQTRELVYINKIMNTQ-------------LTKPVLMMFNISGPIRSVTRKNNNLRDRIKSKVDEQFDQLELKSKFAKILKSHDYTDIEAYEKYCLPKLVDPGFENGSNQVLSFEYNPIGNKVIVPFAHEYDVVAYVDSVQFDGEQFEEFVQSLILPSS------FKNSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNDKKSKVLYVKLHNVTSLNKNVILNTI |
8 | 2fblB2 | 0.16 | 0.06 | 1.92 | 0.43 | HHsearch | | -------------------------------------------------------------------------------TE---------------I-ERKFLVA-------------TFPDGELHAVPLEKTRYSGKLPQLFELDVFAGHL--------------------------SP--LMLVEVEFL---------SEDAAFIPPPFGEEVTEDKR------YKNKALALSIP----- |
9 | 3w3gA | 0.09 | 0.09 | 3.33 | 0.56 | SP3 | | LPSSLRKLFLSNTKYISEEDFKGLINLLSGNCFNAPFPCVPCDGGASINIDRFARYLNLSSTSLRKINAAWFKNMLKVLD-LEFNYLVGEIASGAFLTMLPRLEILDLSFNYIKGSYPQHINISRNFSKLLSLR-ALHLRGYVFQELREDDFQPLMQLPNTINLGINFIKQIDFKNFSNLEIIYLSENRISPLVKFDPHSNFYHFTRPLIKPQCAAYGK--ALDLSLNSIFQFENLPDIACL |
10 | 1p35a | 0.11 | 0.10 | 3.62 | 0.73 | PROSPECTOR2 | | IDVSQTIIRDNTQLTKPVLMMFNKSKVDEQFDQLERDYSDQMDGFHDSIKYFKDEHYSVSCQNGSVLKSKFAKILKS--HDYTDKKSIEAYEKYC-------LPKLVDERNDKPGFENGSNQVLSFEYNPIGNKVIVPFAHEYDVVAYVDSVQFDGEQFEEFVQSLILPSSFK-----NSEKVLYYNEASKNKSMIYKALEFTTESSWGKSEKYNWDKKSKVLYVKLHNVTSLNKNVILNTI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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