>PF11398 (377 residues) MHLESIEILGFRGINRLSLTLDENNVLIGENAWGKSSLLDALSLLLAPTLPLYHFDMQDF HFTPGDENSREKHLQIIFTFCETAPGHHLSPRYRSLSPVWVEGNESLYRVFYRLEGEVDE SQSVFTWRSFLDADGHPIPLDNIDELAREIIRLHPVLRLRDARFMRRLRSGTLAATLDNS NEKLAQQFEQLIRELVQNPQKLTDKELRQGLVAMQQLLEHYFSEQNATGNDRRHHRHART HNGKSWRSLDNINRLIADPNSRSSRIILLELFSTLLQAKGSVVLDPHARPLLLIEDPETR LHPIMLSVAWGLLTQLPLQKVTTTNSGELLSLVPMEQVCRLVRESSRVATYRIGRQGMNA EDSRRIAFHIRLNRPAS |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 360 | | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | MHLESIEILGFRGINRLSLTLDENNVLIGENAWGKSSLLDALSLLLAPTLPLYHFDMQDFHFTPGDENSREKHLQIIFTFCETAPGHHLSPRYRSLSPVWVEGNESLYRVFYRLEGEVDESQSVFTWRSFLDADGHPIPLDNIDELAREIIRLHPVLRLRDARFMRRLRSGTLAATLDNSNEKLAQQFEQLIRELVQNPQKLTDKELRQGLVAMQQLLEHYFSEQNATGNDRRHHRHARTHNGKSWRSLDNINRLIADPNSRSSRIILLELFSTLLQAKGSVVLDPHARPLLLIEDPETRLHPIMLSVAWGLLTQLPLQKVTTTNSGELLSLVPMEQVCRLVRESSRVATYRIGRQGMNAEDSRRIAFHIRLNRPAS | |||||||||||||||||||
1 | 3qktA | 0.15 | 0.12 | 3.95 | 1.74 | SPARKS-K | MKLERVTVKNFRSHSDTVVEFKEINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK------VGARDTYIDLIFEKDG-----------------------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEKLI-----PYNIFLNAGQIDAILESDEAREKVVREVLNLETAYKKLSELKGALAREAALSKIGELASEIFAEFTEGK----------YSEVVVRAEENKVRLFVVWLSGGERIALGLAFRLAMSLYLAGE------ISLLILDEPTPYLDEERRRKLITIMERYIPQVILVSHDEELKDAA--DHVIRISLENGSSKVEVVS----------------------- | |||||||||||||
2 | 3qktA | 0.15 | 0.12 | 4.12 | 2.43 | FFAS-3D | MKLERVTVKNFRSHSDTVVEFKEINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEF------TKVGARDTYIDLIFEKDG-----------------------TKYRITRRFLKGYSSGEIHAMKRLVGNEWKHVTEPSSKAISAFMEK---LIPYNIFLNAIYIRQGQIDAILESDEAREKVVREVLEELIEKVKKYKALAREAALSKIGELASEIFAEFTEGKYSEVVVRAEENK-VRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL------AGEISLLILDEPTPYLDEERRRKLITIMERYIPQVILVSHDEELKDAADHVIRISLE--NGSSKVEVVS----------------------- | |||||||||||||
3 | 5xeiA | 0.13 | 0.12 | 4.21 | 1.76 | HHpred | PYIEKLELKGFKSYGNVVIPFSKFTAIVGANGSGKSNIGDAILFVLGGLKAMRATRISDLIFAGSKGEPPAKYAEVAIYFNNEDRGFPIDEDEVVIKRRV-Y-PDGRS--AYWLNGRRATAMISPEGYNLV-LQGDITKFSPRRQLIDEISGIAKIKRLESMIDEGAIEERELKKEVSLDLEVLRKEIEDMEAEIKALEPVNMKNVFMRTLEAIAKNFSELFAKLSPGGSARLLENEDPFSGGIEAKPAGKDVKRIEAMSGGEKALTALAFIFAIQRFKP--------APFYLFDEIDAHLDDANVKRVADLIKESSSQFIVITLRDVMMANAD--KIIGVSMRDGVSRVVSLSLEKAMKI---------------- | |||||||||||||
4 | 4i99A | 0.12 | 0.10 | 3.53 | 1.64 | MUSTER | PYIEKLELKGFKSYGNVVIPFSKFTAIVGANGSGKSNIGDAILFVLGGLSAKARASRSDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPIDED------------------EVVIRRRVYPDGRSSYWLN-----GRRATRSEILDILTAAI-----------------SPDGYNIVLQGDITKFIKSPLERRLLIDDISGIKEKKNVFRTFEAISRNFSEIFAKLSPGGSARENPEDPFSGGLEIEAKPAGKDVKRIEASGGEKALTALAFVFAIQKFKP--------APFYLFDEIDAHLDDANVKRVADLIKESESQFIVITLR-----VANADKIIGVSR-DGVSKVVSLSLEKA------------------- | |||||||||||||
5 | 4nckA | 0.15 | 0.12 | 4.09 | 1.73 | CNFpred | MKLERVTVKNFRSHSDTVVEFKGINLIIGQNGSGKSSLLDAILVGLYWPLRIKDIKKDEFTK------VGARDTYIDLIFEKD-----------------------GTKYRITRRFLKGYSGEIHAMKRLVGNEWKHPSSKAISAFMEKLIPYNIFLNAIYIR---------------GQIDAILESDEAREKVVREVL-KYKALAREAALSKIGELASEIFAEFTEGKYSEVVVREENKVRLFVVWE--GKERPLTFLSGGEGIALGLAFRLAMSLYLA------GEISLLILDEPTPYLDEERRRKLITIMERYIPQVILVSHDEELKDA--ADHVIRISLENGSSKVEVVS----------------------- | |||||||||||||
6 | 5z67A | 0.14 | 0.11 | 3.92 | 1.41 | HHsearch-2 | MYLKEIFVDNFRNLKKQKLEFCEVNLIYGLNAQGKSNLLEAIRLLSMGRS-FRGSKMSELVKFD------EEYFYVRGLVRSADFYEK------KI-EFGYKV-NGNKVIK--VNGNKLILGHF-LTVIFSPEDEGPSRRSVDKNYFFDLLQYNKTLSNRNSLLKKIKEEG----KGEDLLEIFDEKLAEYGARIIKVRNNY-LEKLKNSMSKFLMEISN--EKLEIIYLNGVKEKLDLKYLSTQVPHREDFGYDSRVYSQGQKRTAALCLKLSELEILEE---ETGEKPVLLLDDVMSELDDNRKKYILKKLEG--FQSFITHTSKSDVE---GDCCFKIYD--G--IVDKLA----------------------- | |||||||||||||
7 | 5z67A | 0.17 | 0.15 | 5.04 | 2.45 | Neff-PPAS | MYLKEIFVDNFRNLKKQKLEFCEVNLIYGLNAQGKSNLLEAIRLLSMG-RSFRGSKMSELVKFDEEYSADFYEKKIEFGYKV--NGNKVIKVNGNKLKSTGEILGHFLTVIFSPEDIEIIKEGPSRRRKYLDACISVID----KNYFFDLLQYNKTLSNRNSLLKKIKEEGKGEDLLEIFDEKLAEYGARIIKVRNNYLEKL-KNSMSKFLMEISNEKLEIIYLNSAGVKEVHEENLIREKLKNRLTKSLTLDLKYLSSSQGQKRTAALCLKLSELEILEEET---GEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSKSDVEG---DCCFKIYD-------GIVDKLA-------------------- | |||||||||||||
8 | 5z67A | 0.14 | 0.12 | 4.05 | 1.60 | HHsearch | MYLKEIFVDNFRNLKKQKLEFCEVNLIYGLNAQGKSNLLEAIRLLSMGRS-FRGSKMSELVKFD------EEYFYVRGLVRSADFYEK------KI-EFGYKV-NGNKVI--KVNGNKLKLGHFLTV-IFSPEDEGPSRRSVDKNYFFDLLQYNKTLSNRNSLLKKIKEEG----KGEDLLEIFDEKLAEYGARIIKV--------RNNYLEKLKNSMSKFLMEIEIIYLNGVKEKLDLKYLSTQVPHREDFGYDSRVYSQGQKRTAALCLKLSELEILEE---ETGEKPVLLLDDVMSELDDNRKKYILKKLEG--FQSFITHTSKSDVE---GDCCFKIYD--GI--VDKLA----------------------- | |||||||||||||
9 | 5z67A | 0.16 | 0.13 | 4.31 | 1.98 | PROSPECTOR2 | MYLKEIFVDNFRNLKKQKLEFCEVNLIYGLNAQGKSNLLEAIRLLSMGRS-FRGSKMSELV------KFDEEYFYVRGLVRS----------------------ADFYEKKIEFGYKVNGNKVIKVNGNKLKSTGEILGHVIDKNYFFDLLQYNKTLSNRNSLLKKIKEEGK----GEDLLEIFDEKLAEYGARII--------KVRNNYLEKLKNSMSKFLMEISNEKGVKEVHEENLIREKLKNRLTKSLTLDLKYSSQGQKRTAALCLKLSELEILEEET---GEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSK---SDVEGDCCFKIYDG----IVDK-----------------------LA | |||||||||||||
10 | 5z67A | 0.17 | 0.14 | 4.55 | 2.20 | SAM | MYLKEIFVDNFRNLKKQKLEFCEVNLIYGLNAQGKSNLLEAIRLLSMGMSELVKFDEEYFYVRGLVRSA-FYEKKIEFGYKVNGNKVINGNKLKSTGE----ILGHFLTVIFSPEDIEIIKEGPSRRRKYLDAC-----ISVDKNYFFDLLQYNKTLSNRNSLLKKIKEEGKG----EDLLEIFDEKLAEYGARIIKVR--------NNYLEKLKNSMSKFLMEISNEKLKNRL--LDLKYLSQVGPHREDNGYDSRVYSQGQKRTAALCLKLSELEILEE---ETGEKPVLLLDDVMSELDDNRKKYILKKLE--GFQSFITHTSKSDVE---GDCCFKIYDG--------------------------------- | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |