>PF11379 (352 residues) VPMPGTGFASRHERATRAELARRLAALKDFDFAGELDPPFPHRGPVYLVPADTLVGAEAA AFGVRGEHDLFGGVAPHACVATKAITHPLVEPDAFAPTGWSREFGHRVRDVVLRGFSAFA PEDARRAGLRLLGHGPVRLKAVRATAGRGQIAVCGAAELEAALAAADAAELSGHGLVLEE DLAEVTTYSVGQVRVADLVASYCGTQRLTPDNGGAQVYGGSDLLVARGDFEALLALDLPE GARLAVAQARTYDAAAMECFPGLFASRRNYDVAQGVDAAGRRRSGVLEQSWRAGGASGAE VAALEAFRADPGLRVVRASTVEIYGQHHAPPPGAVVYFRGEDERVGPMTKYA |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | 20 40 60 80 100 120 140 160 180 200 220 240 260 280 300 320 340 | | | | | | | | | | | | | | | | | | |||||||||||||
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Seq | VPMPGTGFASRHERATRAELARRLAALKDFDFAGELDPPFPHRGPVYLVPADTLVGAEAAAFGVRGEHDLFGGVAPHACVATKAITHPLVEPDAFAPTGWSREFGHRVRDVVLRGFSAFAPEDARRAGLRLLGHGPVRLKAVRATAGRGQIAVCGAAELEAALAAADAAELSGHGLVLEEDLAEVTTYSVGQVRVADLVASYCGTQRLTPDNGGAQVYGGSDLLVARGDFEALLALDLPEGARLAVAQARTYDAAAMECFPGLFASRRNYDVAQGVDAAGRRRSGVLEQSWRAGGASGAEVAALEAFRADPGLRVVRASTVEIYGQHHAPPPGAVVYFRGEDERVGPMTKYA | |||||||||||||||||||
1 | 2vpqA | 0.14 | 0.12 | 4.14 | 1.39 | CNFpred | -------------RGEIAVRIIRACRDLGIQTVAIYSKDALHADEAYCVGPT-NILSIATSTGCDGVHPGYGFLAENADFAELCLKFIGPSYQSIQKMGIKDVAKAEMIKANV-DGLMKDVSEAKKIAKKIG--YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAFGNGGLYMEKFIENFRHIEIQIVGDSGNVIHLGERDCTIQR-------RMQKLVEEAP-SPILD--------DETRREMGNAAVRAAKAV--NYENAGTIEFIYDLN---DNKFYFMEMNTRI----QVEHPVTEMVTGI---DLVKLQLQVAMGDVLPY-TGHAIEFRINAE--------- | |||||||||||||
2 | 2vqdA | 0.16 | 0.15 | 5.00 | 1.32 | Neff-PPAS | -------MLEKVLIANRGEIALRILRACKHSTADRELMHLSLADESVCIGPAPAIIAAAEVTGATAIHPGYGFLAENADFAEQIERSGFVGPTAEVIRVSAKDAMKRAGVPTVPGSDGPLPEDEETALAIAREVGPVIIKAAGGGGGRGMRVVYDESELIKSAKLTRTEAGAAFGVYLEKFLTNPRHVEVQVLSDGQGNAIHLGDRDCSLQRRHQKVIEEAPAPGI-----------DEKARQEVFARCVQACIEIG--YRGAGTFEFLYEYFIEMNTRVQVEHPVSEMVTGV---DIVKEMLRIASGEKLSIIRGHALECRINAEDPHAPGGNGVRVDSHLYSGYSVPPNY | |||||||||||||
3 | 3wvqA | 0.18 | 0.16 | 5.11 | 1.03 | HHsearch | DVLVLPVAPQ-------EEFLAYVTSLTGTRRLTVVVPPPG-RLGAGALTADRLADPRFAALEAFAGR-PVHEVFALWPDAVDALGCPEALEGIGSSKAAFRALAAGAGVALPAGAVCADRRRAHRHVTRLLDESPVILKQDYGSGSDGNEILADSAALDAYLDERWDWEGGRHRVVVERYHPGSRAYFAEFWISDGG-VRLGGHGERY-R--P--LPDSQV-----------PAPDLDQAQLDDLVGGRRLCVALHAL--GYR-GVLSADAVV--TPAGEVL--FTEHNGRATGSTIYEVG-KRVVGPGFGTDRILLERVWPEGW--EAPSAGGHLYDPANTHRKGV--L- | |||||||||||||
4 | 3q2oA | 0.12 | 0.10 | 3.43 | 1.00 | PROSPECTOR2 | MTRIILPGKTIGQLG--RMMALAAKE-MGYKDPTKNSPCAQVADIEIVASYDDLKAIQHLAEIS-------DVVTYE-------------------FENIDYRCLQWLEKHAYLPRLVQNQEQLTEAIAEL--SYPSVLKTTTGYDGKGQVVLRSEADVDEARK-----LANAAECILEKWVPFEKEVSVIVIR----------------SVSGETKVFPVAENIHVNNIESIVPARITEELSQKAIAYA---KVLADELELVGTL--AVEMF--ATADGEIY--INELAPRPHETSQFGQHIRAICNLPLGETNLLKPVVMVNRQVNRLTGCYLHLYGKEEAKAQRKMQEQ | |||||||||||||
5 | 3rv4A | 0.13 | 0.10 | 3.34 | 1.33 | CNFpred | --------------PAIISAAEITG------------------AVAIHPGYGFLSAEQVERSGFIFIG--------PKAETIRLMG-------------DKVSAIAAMKKAGVPCVPG-DMDKNRAIAKRIG--YPVIIKASGGGGGRGMRVVRGDAELAQSISMTRAEAFSNDMVYMEKYLENPRHVEIQVLADGGNAIYLAERDCSMQR-------RHQKVVEEAP-APGIT----PELRRYIGERCAKACVDIG------YRGAGTFEFLFEN-----GEFYFIEMNTRI----QVEHPVTEMITGV---DLIKEQLRIAAGQPLSI-RGHAVECRINAE--------- | |||||||||||||
6 | 3lp8A | 0.10 | 0.09 | 3.47 | 1.32 | Neff-PPAS | --------------GREHSMLHHIRKSTLLNKLFIAPGREGMSGLADIIDIDINVIQVCKKEKIELVVIGPETPLMNG-LSDALTEEGIFGPSKAAARGFTKELCMRYGIPTAKYGYFVDTNSAYKFIDKH--KLPLVVKADGLAQGKGTVICHTHEEAYNAVDAMHKFGEAGCAIIIEEFL-EGKEISFFTLVDGSNPVILGVAQDYKTIGDNNKGPNTGGMGSYS-KPNIITQEMEHIIIQKIIYPTIKAMFNMNIQFRGLLFAGIIIKKLLEYNVRFG--DPETQSILPRLNSDFLKLLSLTAKGKLGNESKKAALCVVVASRGYPGLPNVQLLHAGTRREGNNWVSDS | |||||||||||||
7 | 3wvqA | 0.16 | 0.12 | 3.96 | 1.32 | CNFpred | -------------RLADPRFLAALREAF-----------AGRPVHEVFALWDAVVADLADALGCPEALEGHDFLTGGLIGSSKAA---------------FRALAAGAGVALPAGAVCADRRRAHRHVTRLLDESPVILKQDYGSGSDGNEILS-SAALDAYLDERWDWLTEGHRVVVERYHPGSRAYFAEFWISDGGVRLGGHGEMRYR--------PLPDSQVMPAPD------LDQAQLDDLVEGGRRLCVALHALYRGVLSA----DAVVTP----AGEVLFTEHNGRATGSTHIYEIVGKRVVGPGFGTDRILLERVW----------------------------- | |||||||||||||
8 | 1kjiA | 0.15 | 0.14 | 4.57 | 1.24 | Neff-PPAS | --------------ELGKEVAIECQRL-GVEVIAVDRYAVAHRSHVINMLDGDALRRVVELEKPHYIVPEIEAIA--TDMLIQLEEEGLVVPCARATKGIRRLAAEELQLPTSTYRFADSESLFREAVADIG--YPCIVKPVMSSSGKGQTFIRSAEQLAQAWKYAQQGGRAGR-VIVEGVVKFDFEITLLTVSAVDGVHFCAPVGHRQED--------GDYRESWQP-------QQMSPLALERAQEI-ARKVVLALGGYGLFGVELFVCIFSEVSPRPHDTGMVTLISQDL---SEFALHVRAFLGLPVGGQYGPAASAVILPQLTVGADLQIRLFGKPEIDGSRRLGVA | |||||||||||||
9 | 3vmmA | 0.13 | 0.09 | 2.96 | 1.32 | CNFpred | ------------EEEVVEQIVKVAEMF---------------GADAITTNNIAPMAKACERLGLRGA----------GVQAAENAR-------------DKNKMRDAFNKAG-KNKRVTTLEDFRAALEEIG--TPLILKPTYLASSIGVTLITDTETAEDEFNRVNDYLKSEAPFIAEEFLQ-SDYISIEGIMADGEYFPIAIHDKTPQI-------FTETSHITPS--------ILDEEAKKKIVEA--AKKANEGLG--LQNCATHTEIKLMK----NREPGLIESAARFAGWNMIPNIMAQLLLDV------------------------------------------ | |||||||||||||
10 | 2vpqB | 0.16 | 0.14 | 4.72 | 1.23 | Neff-PPAS | ----------------RGEIAVRIIRACRYSEGDKDALHTQIADEAYCVGPTLSILSIATSTGCDGVHPGYGFLAENADFAELCEACQLIGPSYQSIQDVAKAEMIKANVPVVPGSDGLDVSEAKKIAKKIG--YPVIIKATAGGGGKGIRVARDEKELETGFRMTEQEAQTAFGLYMEKFIENFRHIEIQIVGD----------------SYGNVIHLGERDCTIQRRMQKLVEEAPSETRREMGNAAVRAAKAVN--YENAGTIEFIYDYFMEMNTRIQVEHPVTEMVTGI---DLVKLQLQVAMGDVLPYLTGHAIEFRINAENPYAPGGYGVRIESACYTNYTIPPYY | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |