Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260 280
| | | | | | | | | | | | | | |
| Seq | RDGIPSIDKPRFVSVPEAGKFLQDSDIVLGLDINGDIRAYPLQILVWHEIVNDKVGGVPVAVTYCPLCFTNQVFNRMVDGQTLEFGTSGKLYNNNLVMYDRASESLWSQALGEGIVGKYAGTKLERIPFDLAYWREWKGLYPDAKVLSADTGFGRPYGADPYGDYYTSPSIYFPISNHDSRLGPKEIVIGLEHDGVYRAYQLSKIEEEHVINDDLAGRPVLIASHYQFMTRVFERTVDDQVLEFEYKDGVMTDRQTGSVWGFDGVATDGEMTGKRLQRLPLDQGFWFAWAAFHPGT |
1 | 3bwsA | 0.09 | 0.06 | 2.46 | 1.31 | CNFpred | | ---------RLAIPLL-------EDEGMDVLDINQTVRLSPPEKYKLGFVETISIPHNELWVSQMQ-ANAVHVFDLKTLAYKATVDLTGK--WSKILLYDPIRDLVYCSNSEDISVIDRKKLEIRKTIGLPRGLLLSK---DGKELYIAQFS--ASNQE------------------------GGGRLGIYSMEKLIDTIGPPG----NKRHIVSGENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF-DKPNTI----ALSPDGKYLYVSC------------------------- |
2 | 4hdjA | 0.10 | 0.09 | 3.49 | 1.06 | Neff-PPAS | | -LLEPAVDGSTIYAAS-------AEGRVMAIQRETGDVLWKKDLERPVSGGVGVGYGLVLVGTLRGDVNSEVLSAPATNGDVVVVQTQ----DDKLIGLDAASDQRWIYESTVPVLTLRGTGAPLIAGNMALAG------LASGKVVAVDVQRGLPIWEQRVAIPQGRSELDRVVDIDGGLLLSGDTLYVVSYQGRAAALDLLWQREASSYVGVAEGFGNIYVSQASGSVEGLDSRGASSLWNNDALAAPAVFSSNVVVGDLEGYVHLLSQVDGRFVGRERVDSDGVRVRPLVVGS |
3 | 3gobA1 | 0.07 | 0.02 | 0.71 | 1.05 | SP3 | | --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SEKPLGRTILDTPLALYRQPDGVVAALLDIRFAPLSDGILVNGHLQCPYHGLEFDGGGQCVHNPHGNGARPAVRSF-------------- |
4 | 4bh6A | 0.09 | 0.08 | 2.98 | 0.97 | SPARKS-K | | VLDAPSLADDFYYSL----IDWSSTDV-LAVALGKSIFLTDVHLCTENEYTSLSWAGSHLAVGQAN--GLVEIYDVMKRKCIRTLRVACLSWNNHVLTSGSRDHRILHRDVR---MPDPFFETIESHEVCGLKWN------VADNKLASGGNDNVGTSKSPILTFDEHKAAAWSPHKRG-------VLATGGGTRRLKIWNVN--TSIKMSDIDSGSQICNMVWSKNTELVTSHGYSKYNLTLWDCNSMDPIAILKGHTLSNDGTTVVSGAGDETLRYWKLFDKP----------- |
5 | 2ivzD2 | 0.14 | 0.11 | 3.68 | 0.45 | FFAS-3D | | -------------------------TRIAYVVQTFPYELR----------VSDYDGYNQFVVHRSPQPLMSPAWSP--DGSKLAYVTFE-SGRSALVIQTLANGAV------RQVASFPRH-------NGAPAF------SPDGSAFALSKTGSL---------NLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSQHIKQDLATGGVLAPNGTMVIYSTDGRFKARLPATDGQVKAWS---P-- |
6 | 5cxmA | 0.09 | 0.03 | 1.02 | 0.46 | HHpred | | ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------VNVGTMADLKAKGELKGNTPKGPVTVVPNGSGQISAVNPTHNGCQVNWKKANGKFVCPCHGAEFAATGKVLKGPAI-RDLPTYATQVS------------ |
7 | 3p1lA | 0.12 | 0.11 | 3.84 | 0.79 | MUSTER | | LPTVENQFTPTTSVGSGIGNFYSADNVVYAADRAGLVKALNADKEPALLSGGVTVSGGHVYIGS--EKAQVYALNTS-DGTVAWQTKVAGEALSRPVVSD---GLVL--SNGQLQA-EADGAVKWTVNLDMPSLSLRGESAPFGAAVVMEQGWQQRISQATGSTEIDRLSDVDTTPVVVNG-----VVFALAYNGNLTALDLRS-RELGSVNDFIVDGNRIYLVDQNDRVMALTIDGGVTLWTQSDLLHLVVGDSEGYWINVDGRFVAQQKVDSSGFQTEPVAA--YSIT------ |
8 | 1l0qA | 0.08 | 0.06 | 2.39 | 1.31 | CNFpred | | ---------FAYIANS-------ESDNISVIDVTNKVTATIPVGSNPMGAVISPD-GTKVYVANAH-SNDVSIIDTATNNVIATVPAGS---SPQGVAVSPDGKQVYVTNSTLSVIDTTSNTVAGTVKTG-----------KSPLGLALSP--------------------------------GKKLYVTNNGDKTVSVINTVTKAV-SPKGIAVTGTKVYVANFDSMSISVIDTVTNSVIDTVKVE-AAPSGI----AVNP-TKAYVTNVD-----KYFNTVSMIDTGTNKITAR |
9 | 5cxmA | 0.08 | 0.03 | 1.05 | 0.70 | HHsearch-2 | | ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TVNVGTMADLKAKGELKGNTPKGPVTVVPNGSGQISAVNPTHNGCQVNWKKANGKFVCPCHGAEFAATGKVLKGPAI-RDLPTYATQVSGNNILVKA---- |
10 | 4immA | 0.14 | 0.13 | 4.41 | 1.01 | Neff-PPAS | | QDLQIAPLADGMIAAS-------RSGIVSGYMGESIAWQYNAEDVITGGVGIDDQGSVAVIGTR---SGKLIALDARTGAARWVVELASSSLAPTIFGLDINSGATVWQYATQVPNTSVRGM----AKPLALDARTVLIGGADGRIHALDTMTGAPVWTRRVGLAMGSGEIDQLRDIDGTPTVVDHYLYAASYSGQLAGFDMTTGRTMFVSELSSTKADAVIGSSTDGDVVAFNRMTGEKLWENHDLKNPVTIGTYIAVGDADGVVHILNHQGQIISRANTKGA---LTNLTVINN |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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