Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160
| | | | | | | | |
| Seq | QNLSPYCCERLSAESLQVTLPDGLQIDVCEKPKTLFLAYIVSCCFRLQGMTSLKEKIVIKAKIKGIFRRKTVTYYCYHGAEYGQQIIDLLNQYPLIGETLAELDFRDLVLNIHQGQWQLEVEHFAASEIVSRLPASRRYLRLTSEQRYLLLSSLLMFSQLM |
1 | 4nkbA | 0.10 | 0.09 | 3.43 | 0.65 | SPARKS-K | | DRLEGQRVCT-AGGRYIVELDTRCRFEVAAQGN------FVKRILIVEVDEM---VQTVYVHRIP----DRTVRGRNGEEELYSQMKEVQNDYMRLQKMVAVISGRVAKVTFRRPDAQAQLMENGSVIVRKMDNGEIFNCQKQATKVNEVYKYLIRFEQCL |
2 | 3g4sE | 0.09 | 0.07 | 2.83 | 0.62 | FFAS-3D | | --------------RVELEIPEDVDAEQDHLD-----ITVEGDNGSVTRRLWYPD---IDVSVDG----DTVVIESDEDNAKTMSTIGTFQS--HIENMFHGVTEGEYGMEVFYSHFPMQVNVEGDEVVIENFLGEKAPRRTTIHDIEAVGQTAADIEQL- |
3 | 3ms5A | 0.13 | 0.10 | 3.43 | 0.31 | HHpred | | --------------------FYGHTWQVQDKIDANNVA---------------YTTGKLSFHTDYPALTGGDSEIV-----DGFNVCQKLKNNPQAFQILSSTFVDFTDIGVDYDSKHKIIEDKGQVVRINFNNATRDTIDVPVERVQPFYAALKEFVDLM |
4 | 3c68A | 0.14 | 0.12 | 4.05 | 0.62 | MUSTER | | LSDKTIAGEYPDYQRKISATRDGLKVTFGKVRATWDLLTSGESEYQVHKSLPVGNRFTSKAHINGSTTLY-TTYSHLLTAQEVSKEQMQIRDILARPAFYLT--------ASQQ-RWE---------EYLKKGLTN---PDATPEQTRVAVKAIETLNGNW |
5 | 2dzdA | 0.03 | 0.02 | 1.46 | 0.77 | CNFpred | | -----------------------DEVYVEKLIEN---PKHIEVQILGDYE---GNIVHLYERDCSVQRRHQKVVEVAPSVSLSDELRQRICEAVQLMRSVGYVNAGTVEFLVSGDEFYFIEVNPRIQVEHTITEMITGI-----DIVQSQILIADGCSLHS |
6 | 1bxgA | 0.11 | 0.07 | 2.67 | 0.39 | HHsearch-2 | | ----------------SIDSLWDGETVTRFDSKTGAHFVIRLDST-----QLGP-------------AAGGTRAAQYSQLADALTDAGKLAGAMTLKMAVSNL-------------------PMGGGKSVIALPAPR--HSIDPSTWARILRIHAENIDKL |
7 | 5vglA | 0.07 | 0.06 | 2.30 | 0.75 | Neff-PPAS | | ------------------GISGGGGGKVHALLPNKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEFWAKEKLVALDNKNMSYSYIFTECF---------------TGYEDYTATMQIVEGPGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKI |
8 | 1ly7A | 0.13 | 0.06 | 2.17 | 0.51 | HHsearch | | -----------------------------------------------------------------------------MDETTYERLAETLD---SLAEFFEDLAFEDYDVSFGSGVLTVKLGGDLGTYVINKQTPNKQIW-LSSPNGVSLHELLAAETKA- |
9 | 3dtdC | 0.11 | 0.09 | 3.16 | 0.68 | SP3 | | GLWSINCGIQEGKKHRQEVNDQNVAMSVVLNADGV-----VSGNLTVPFGILVSKPVRLQVDEGKAVIETGIRTCVPAGCIVPIVF------DKNYVAALRA--GKHLKLAMTIAA--------PGEPPLNDLF-----VQLNG-----FSNALNRLIALQ |
10 | 5vglA | 0.07 | 0.06 | 2.27 | 0.58 | PROSPECTOR2 | | PGI-----------------SGGGGGKVHALLPNKVMPSLSVCELVEGEANVVGCVRYVKGIMHPIEEEFWAKEKLVALDN----------------------KNMSYSYIYEDYTATMQIVEGKGSRFDWSFQCKYIEGMTESAFTEILQHWATEIGQKI |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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