Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | VVPEPDYRIPIVLLGATGALVYTDNLVAAVPVGLLGLLLLVQATRVRFVFDDEALEVKVGSELQESGENVFVGGKNRWKYSSFVNWEFWWPNFPILVYFKETQTKPEGQIHFFPIIFNGKQLYDVMVER |
1 | 3qkgA | 0.06 | 0.05 | 2.43 | 0.87 | SPARKS-K | | ----DNIQVQENFNISRIYGKWYNLAIGSTSPWLKKIMDRMTVSTLVLGEGEAEISMTSTGVEETSGAYEKTDTDGKFLYNITMESYVVHTNYYAIFLTKKFSRHHGP-TITAKLYGRLQDFRVVAQGV |
2 | 1txlA | 0.11 | 0.09 | 3.39 | 0.49 | FFAS-3D | | --------------VFQKKADADKTKTFAEIKDYYHK--GYATDIEMIGIEDGIVEFHRNNETTSCKYDYDGYKILTYKSGKKGVRYLFESKAPKYIQFSDHIIAPRKSSHFWPTYYSSEEVVEEMMSH |
3 | 1qqgB2 | 0.06 | 0.04 | 1.66 | 0.24 | HHpred | | -----------------------------------GQTKNL-IGIYRLCLTSKTISFVKLNSE----A-----AAVVLQLMNIRRCGHSE----NFFFIEVGRSAVTGPGEFWMQVDDSQNMHETILE- |
4 | 5ejjA3 | 0.12 | 0.11 | 3.80 | 0.80 | MUSTER | | -LMEG-----SCVSRVGYEWSLRAGREQEDVKSAAERLSMA-SFRFTYLNAEHGLVIREQKPEAAQQKYLDKFSKGAVPYKDVIEFTAMQSL------FTRLVTI----EVVFPAFFSSLDLYKRSREA |
5 | 3v9jA | 0.10 | 0.09 | 3.16 | 0.63 | CNFpred | | -------VLAKTMVGQGKTVIQAEIDAAAELIDFFRFNAKFAVELEQPISVPPSTNHTVYRGL------GFVAAISPFNFTIGGNLAGAPALMGNVVLWKPSD------TAMLASYAVYRILREAGLPP |
6 | 6hq6A2 | 0.15 | 0.05 | 1.83 | 0.35 | HHsearch-2 | | ---------------------------------------------------------------------------NTISKEAVS-------KSELLSLLVSKEKDSIGEYHFNGEFNNASNLKQALEDL |
7 | 8abpA1 | 0.10 | 0.09 | 3.41 | 0.69 | Neff-PPAS | | -------------LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNADSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVSPSEMLYNWVAKD |
8 | 6hq6A2 | 0.14 | 0.05 | 1.58 | 0.35 | HHsearch | | --------------------------------------------------------------------------------------NTISSKSELLSLLSKSEKDSIGEYHFNGEFNNASNLKQALED- |
9 | 5ejjA3 | 0.12 | 0.11 | 3.82 | 0.86 | SP3 | | ---LMEGA--SCVSRVGYEWSLRAGREQEDVKSAAERLSMA-SFRFTYLNAEHGLVIREQKPEAAQQKYLDKFSKGAVPYKDVIEFTAMQSLT-----FTRLVTIGEV---VFPAFFSSLDLYKRSREA |
10 | 2knqA | 0.11 | 0.09 | 3.40 | 0.56 | PROSPECTOR2 | | MAYGREDVANTRARETAARFT--------AALELAIDRATLSGQPVGIHFSDSAWRIMVPGKTPSAWRWVPLQEDADWDEELSIHLQPFKPDDPFSLLMANAGTGESGSWPLDQTLARD-------TRP |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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