Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240 260
| | | | | | | | | | | | | |
| Seq | EXRRQTLQIEVEKLERRRERIQNEMRTSFAGVSQDLAIRVQGFKDYLVGSLQDLVSTAEQLELIPQYPEPPIESDRPLPKREIEPEPSLTPQFAEQGFQEQSQQIRRILDQYRTMPDYYGPPWQLRRTFEPIHAKRVSTWFFNQGGRGALRTMGSRLQNILIASAITSVLRTLYDRRLRTLILANSPERLGEWRRGLQDCLGLDRRDFSPERGIALFEDANIVAIKADRLVQDGKLPFIVVDDSEEKISLSLLQYPLWLAFAPEPQSQ |
1 | 6cy1A | 0.06 | 0.06 | 2.38 | 0.61 | SPARKS-K | | FKKEEKESLDKGLEKSSQSFFDKVSRAVKSKVDD--EVLDDLEEVLIASTVKIIRRIEERVARD-----------------------KYVNV-----AELNNILREEISGLLLENPHAGTKPKLAHQFRAAAVDQLVIWSERVGVPIVKQAMGSD-----PASVAFDTVQSAVSQDADVVIIAGRLHNKVNLMNELSKIKRVMQKVVAPHEVLLVLDTGQNAFEQAKQFTAATEVTALAVTKLDGTARGVVIGIPVKYIGVGEKMQD- |
2 | 4d8mA1 | 0.09 | 0.06 | 2.16 | 0.78 | FFAS-3D | | --KDQQLFNAI--MDAVNKMVDNKFLSY---NLSTLNKTIEGLQG----NLGLFQNAIQVAI---CQGSTPERFDQNCTPCNPNQPCKDDLDRVASRFDTANSQFTQHLPEFKNPWS--------DENSTQEFKRTSVELTLP--------------MYTTVATLHLLLYEGEFMTKW----NFHNEQYLNNLKVELQQLI-------------------HSYSETVRTSFLQF---------------------------------- |
3 | 5jxrA1 | 0.14 | 0.07 | 2.57 | 0.51 | HHpred | | ---------------------------------------------------------------------------------------------------------------FRESPPF------IQGTMRDYQIAGL-NWLISENGISGILADEMGLGKTLQTIAFLGYLRHIMGITGPHLVTVP-KSTLDNWKREFEKWTPVNVLVLVDENFDVCITSYEMILREKAHL-KKFAWEYIIIDEASLAQVIRMFNSRNRLLITGTPLQN |
4 | 2w6dA2 | 0.12 | 0.11 | 3.95 | 0.70 | MUSTER | | KKRIDSVEPEFNKLTGIRDEFQKEIINTRDTQARTISESFRSYVLNLGNTFENDFLRY------QPELNLFDFLSSGKREAFNAALQKAFEQYITDKSLTAEKDINAAFKELSRSASQYGASYQITEKLTGKDSPGWAKWAMSKGNLAGFALAGAGLLNYFTVIGIGGIITAVTGILL-ALLGLGVGADQRELVKTAKKELVKHLPQVAHEQSQVV---YNAVKECFDSYERE------VSKRINDDIVSRKSELDNLVK---QKQTR |
5 | 5jxrA1 | 0.13 | 0.07 | 2.57 | 0.52 | HHsearch-2 | | --------------------------------------------------------------------------------------------------------------VFRESP------PFIQGTMRDYQIAGL-NWLISENGISGILADEMGLGKTLQTIAFLGYLRHIMGITGPHLVTVP-KSTLDNWKREFEKWTPEVNDRLVDENFDVCITSYEMILREKAHL-KKFAWEYIIIDEASLAQVIRMFNSRNRLLITGTPLQN |
6 | 5cwmA | 0.14 | 0.12 | 3.97 | 0.84 | Neff-PPAS | | --DPEDELKRVEKLVKEAEELLRQAKEK--GSEEDLEKALRTAEEAAREAKKVLEQAEKEGD----------------------------PEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQG-----DPEVALRAVELVVRVAELLLRIAKESGSEEALERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESGS--EEAKERAERVREEARELQERVKELRER--- |
7 | 5jxrA1 | 0.14 | 0.07 | 2.57 | 0.59 | HHsearch | | --------------------------------------------------------------------------------------------------------------VFRESP------PFIQGTMRDYQIAGL-NWLISENGISGILADEMGLGKTLQTIAFLGYLRHIMGITGPHLVTVP-KSTLDNWKREFEKWTPEVNDRLVDENFDVCITSYEMILREKAHL-KKFAWEYIIIDEASLAQVIRMFNSRNRLLITGTPLQ- |
8 | 3llmA | 0.11 | 0.07 | 2.56 | 0.68 | SP3 | | ---------------------------------------------------------------VVPWSPPQSWTSSNIDEGPLAFATPEQISDLKNELLEQDHDLQAILQERELLP-----VKKFE----SEILEAISQN-----------------SVVIITQVPQFILDDFIQAECNIVVTQPRRISAVSVAERVAFERGEE-----PGKSCGYSVRFESILPRVGVLLRKRGISHVIVDEIERDINTDFLLVVLRDVVQAYPEVR |
9 | 1wp9A | 0.11 | 0.11 | 3.91 | 0.73 | PROSPECTOR2 | | MVRRDLIEVIYAKCKETNLQHAESFRRLFNEKSPEERSKAWAIENDLLYAYVFIAREYKRQAKNPLRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAETGLLESSS----PDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELEAKAGSTKASKEIFSDKRMKKAISLLVQAKEIGLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKQREQKLILPVPSAIMAKGTSSR |
10 | 3s5hA2 | 0.18 | 0.16 | 5.33 | 0.46 | FFAS03 | | --KESDFSNKKKVIDILKRKING-MKTTFSEKGYAILMKYKHYAHNIIYGYENYLKLQEQLELAENDFKTLEIRNKIFNKKNLMVSVTSDYGALKHLFVNSNESLKNLVSYFEEN-DKYIMGWNEEKSKKLFDEEKVKKEFFVL----------PTFVNSVSMSGILFKPGEYLDPSFTVIVAALKNSYLWDTVRGLNGAYGLSARDPNLEKTLATFESAKGLRKMADTMTENDLLRYIIIDKPRRGIELSKLSF------------- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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