Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60
| | | |
| Seq | NWLKHPLNIALLAWLLCVAAAGGMLILLLLGLLNGAFPSKPLRHHWIEIDNQILNALFTLMSIYQHPSLIHHLVLLCWW |
1 | 2vpyC2 | 0.21 | 0.19 | 6.01 | 1.10 | SPARKS-K | | MAGLFPLTALVLALGLAALRVLAGASLLLALLYPLTLPPEARGHLY---------GLFLLLGLGTFPWAGLLAAAGLRA |
2 | 3v5sA1 | 0.09 | 0.08 | 2.94 | 1.18 | MUSTER | | ---MVILGVGYFLLGLILLYYGSDWFVLGSERIARHFNVPSV------VFSLVLLIIGLIGVLVGAELFVDGAKKIALA |
3 | 2yevA | 0.10 | 0.10 | 3.73 | 0.91 | SPARKS-K | | SAQSESGVDFYLAAILLLGFSSLLGNANFVATIYNLRAQGMSLWKMPIYVWSVFAASVLNLFSLAGLTAATLLVLLERK |
4 | 6m9tA2 | 0.19 | 0.18 | 5.70 | 0.59 | FFAS-3D | | -----SVSVAFPITMLLTGFVGNALAMLLVSRSYRRRESKRKKSFLLCIGWLALTDL--VGQLLTTPVVIVVYLSKQRW |
5 | 3x29A | 0.15 | 0.13 | 4.25 | 0.20 | HHpred | | -HIQ----SARALMVVAVLLGFVAMVLSVVGMKN-----PTAKSRVAGGALFLLAGLCTLTAVSWYATLVTQEFFN--- |
6 | 4h33A | 0.14 | 0.14 | 4.73 | 1.11 | MUSTER | | --RSNGLNRFLMIFVLLVIIIPVPMVFIYPDALWWAITVGYGDIVPVTPIGRILASIMMLFGIAFIGMITSTITNFFRC |
7 | 5oqtA | 0.03 | 0.03 | 1.53 | 0.73 | CNFpred | | -----PALVLSFILSGLACVFAALCYAEFASTVPVS-------GSAYTYSYATFGELIAWILGWDLILEYGVASSAVAV |
8 | 2pffB | 0.20 | 0.20 | 6.47 | 0.55 | HHsearch-2 | | EWLENPSNTPDKDYLLSIPISCPLIGVIQLGFTPGEHSAIAETDSWESFFVSVRKAITVLFFIGSLPPSILEDSLENNE |
9 | 2xndJ | 0.15 | 0.14 | 4.67 | 0.72 | Neff-PPAS | | -IDTAAKFIGAGAATVGVAGSGAGIGTVFGSLIIGYARNPSLKQQ-----LFSYAILGFALSEAMGLFCLMVAFLILF- |
10 | 5ilqA1 | 0.10 | 0.08 | 2.80 | 0.51 | HHsearch | | IIYRDPSK-------------KNV--DIAVSSSS--KPNAGNGTGEHVYFTQAENGLYVRMALLYLIFSSTSHPQF--- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|