Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200
| | | | | | | | | | |
| Seq | LLVMALAVSFEPFRLGMTVLMLNRPRPQLQLLAFLCGGFAMGTAVGLVVLFTFRHVSTGSAQFTLPRVQIGIGVAALLVAALLASRVRGPSSNAQLDKVTGRIQSIATGGSLWVALVAGLGIALPSVDFLAALAVIVASGTPAATQVSALLMFNIIAFALIEIPLLAHVVAPERTAEVMARLNSWIQSNRRRNIALVLAVVGCVLLAVGL |
1 | 3wdoA | 0.10 | 0.10 | 3.69 | 1.23 | SPARKS-K | | IILGRALQGSGAIAAAVMALLSDLTREQNRTKAMAFIGVSFGITFAIAMVLGPIITHKLGLHALFWMIAILATTGIALTIWVV--PNSSTHVLNREGMVKGSFSKVLAEPRLLKLNFGIMCLHMLLMSTFVALPGQLADAGFPAAEHWKVYLATMLIAFGSVVPFIIYAEVVGLIVVAEIVLWNAQTQFWQLVVGVQLFFVAFNLMEALL |
2 | 5vkvA | 0.18 | 0.16 | 5.26 | 1.51 | FFAS-3D | | -FLAGVLSFLSPCVLPLVPTYLFRGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHRQ-----TLARVGGVVLVLFGLYMLGLRPRWGVSLRYEGETSRPLGA-----FLLGATLALGWTPCIGPILGAILTLTAVGGG----VGFLLAYILGLAVPFFVVALF----ADRIKGWLRRAGRISHY-VEVLAGVVLVLVGVLLF---- |
3 | 5vkvA | 0.17 | 0.15 | 4.87 | 1.06 | HHpred | | AFLAGVLSFLSPCVLPLVPTYLFRGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLF-----EHRQTLARVGGVVLVLFGLYMLGLRP--RWGV-SLRYE------GETSRPLGAFLLGATLAC-IGPILGAILTLTA----VGGGVGFLLAYILGLAVPFFVVALFADRIKGW-LRRAGRISHYVE----VLAGVVLVLVGVLLFTGTF |
4 | 5vkvA | 0.16 | 0.15 | 4.89 | 1.13 | MUSTER | | AFLAGVLSFLSPCVLPLVPTYLF-GRPLFNALFFILGFGAVFFLLGLPFTLLGGLLFEHR-----QTLARVGGVVLVLFGLYMLGLRPRWGVSLRYEG-----ETSRPLGAFLLGATLALGWTPCIGPILGAILTLTAVGGG--------VGFLLAYILGLAVPFFVVALFADRIKGWLRRAG-RISHYVEVLAGVVLVLVGVLLFTGTF |
5 | 3rkoB | 0.12 | 0.10 | 3.53 | 1.15 | CNFpred | | MLLGGAVGKSAQLPLQTWLADAMAGPTPVSALIHAATMVTAGVYLIARTHGLFLMT-----PEVLHLVGIVGAVTLLLAGFAALVQ---------------------------TDIKRVLAYSTMSQIGYMFLALGVQ---AWDAAIFHLMTHAFFKALLFLASGSVILACMGGLRKSIPLVYLCFLVGGAALSALTAGFFSKDEILAGA |
6 | 5vkvA | 0.17 | 0.15 | 4.99 | 2.43 | HHsearch-2 | | AFLAGVLSFLSPCVLPLVPTYLFRGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLF-----EHRQTLARVGGVVLVLFGLYMLGLRP----RWG--V-SLRYE--GETSRPLGAFLLGATLAWTPGPILGILTLTA-----VGGGVGFLLAYILGLAVPFFVVALFA----DRIKGWLGRISHYVEV----LAGVVLVLVGVLLFTGTF |
7 | 5vkvA | 0.16 | 0.14 | 4.77 | 1.18 | Neff-PPAS | | AFLAGVLSFLSPCVLPLVPTYLFYGRPLFNALFFILGFGAVFFLLGLPFTLLGGLL-----FEHRQTLARVGGVVLVLFGLYMLGLRPRWGVSLRYEG-----ETSRPLGAFLLGATLALGWTPCIGPILGAILTLTAVGG--------GVGFLLAYILGLAVPFFVVALFADRIKGWLRRAGRISHY-VEVLAGVVLVLVGVLLFTGTF |
8 | 5vkvA | 0.18 | 0.15 | 4.98 | 2.45 | HHsearch | | AFLAGVLSFLSPCVLPLVPTYLFRGRPLFNALFFILGFGAVFFLLGLPFTLLGGLLF-----EHRQTLARVGGVVLVLFGLYMLGLRP----RWG-V--SLRYE--GETSRPLGAFLLGATLAWTPGPILGILTLTA-----VGGGVGFLLAYILGLAVPFFVVALFA----DRIKGWLRRISHYVEV----LAGVVLVLVGVLLFTGT- |
9 | 5y78A | 0.14 | 0.13 | 4.58 | 0.91 | PROSPECTOR2 | | IFNIANKRTLNMWKYPWVLSTITKPNVSKKLIKALIWPSLGHTLGHAATCMSFSLV----AISFTHVVKSAEPVFGAVGSALVLGEFFHPLTYLTLVPIVSALSAATELTFTWTGFITAMISTLIAQNTYALITIISIAGVSKAKLFGSIMFCSLFYHLYNEVSYLCLDNVSPVSFSIGNTIKRVIIITRLNFIGSTIAIIGTMLYSKLP |
10 | 5vkvA | 0.16 | 0.14 | 4.58 | 0.63 | SAM | | -FLAGVLSFLSPCVLPLVPTYLFYLRPLFNALFFILGFGAVFFLLGLPFTLLGGLLF------HRQTLARVGGVVLVLFGLYMLGLRP-----------SLRYEG--ETSRPLGAFLLGATLAWTPCIGPILGAILTLT---VGGGVGFLLAYILGLAVPFFVVALFADRIKGW-LRRAGRISHYVEV----LAGVVLVLVGVLLF---- |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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