>PF11130 (248 residues) QFANWLPYSAYLAAEKIFVNRDSMGVMLELMPQSGADERMAEVLISLYANCPPGTGIQFH LFASPQVRSQLRQYANLRVEDEDQAEQAKQWGRPARNGNLFRKLARQRVEHLLQGAQKSL TAGFHYTIRDFRLMLSVAFPGDPEDLNKRDELLALRDSMSSSLRSASLPNRVCDAADLIN WCALFTNPDRISQTDAPDLNYDDGRELRDQIVDFDTIQDPHPSGLTLWKEASPDVLEARF YSIKSFPE |
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Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threading program | 20 40 60 80 100 120 140 160 180 200 220 240 | | | | | | | | | | | | | |||||||||||||
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Seq | QFANWLPYSAYLAAEKIFVNRDSMGVMLELMPQSGADERMAEVLISLYANCPPGTGIQFHLFASPQVRSQLRQYANLRVEDEDQAEQAKQWGRPARNGNLFRKLARQRVEHLLQGAQKSLTAGFHYTIRDFRLMLSVAFPGDPEDLNKRDELLALRDSMSSSLRSASLPNRVCDAADLINWCALFTNPDRISQTDAPDLNYDDGRELRDQIVDFDTIQDPHPSGLTLWKEASPDVLEARFYSIKSFPE | |||||||||||||||||||
1 | 4hqlA1 | 0.12 | 0.08 | 3.02 | 0.57 | SPARKS-K | ----------DEVKYSEEVCNEQVDLYLLVDGSGSIGTKVIPMLNGLINSLRDTINLYMNLFGSGQSIDK-RQALSKVTELRKTY------TPYGTTS--MTAALDEVQKHLND-------RVNREKAIQLVILMTDGVPNS------KYRALEVANKLKQ----RNVRLAVIINHQFNRLIAG-------CRPREPNCKFADWNEAVALIFIAKVCTEVERVA------------------------ | |||||||||||||
2 | 3eo8A | 0.12 | 0.08 | 2.97 | 0.71 | FFAS-3D | ELQDTISVRKFKNQD--------------------VSDEDILKIKAA-GAAPSGKNIQFVVIKRRDLEKIADVITK------KQQEILVEDKVSVDKANRFRKFVKNFTLFYLKAP---------------VLVLVFTKVYNPSGYYELESLGAAIENFTLSAIELGYGSCWLTADEIEAVLEAETGFEKGEYVPEDNLKSPSKKPVEEIC------------------------------------- | |||||||||||||
3 | 3eg9A1 | 0.10 | 0.07 | 2.54 | 0.29 | HHpred | ----------------------IFLYVVDTCMEDEDLQALKESMQMSLSLLPPTALVGLITFGRMQVAKQLQEMLGLSSNRFLQ------------PVQKIDMNLT---DLLGELQRDPWPPLRTFPNTGARIMMFIGGPATQGPDHDVKKGTKHFEALANRAATTGHVIDQTGLLEMKCCPNL-TGGYMVM-----GDSFNT-SLFKQTFQRVFT-------------------------------- | |||||||||||||
4 | 5wmmA | 0.09 | 0.09 | 3.37 | 0.67 | MUSTER | CLKEKVSLRCQHADVADGLPVKYFDTVILNSVVFPDAAYLSRVLDVALDRLAPGGRILVGDVRNYGTLREFLTAVHHAQHPQDSASAVRAEKELVIDPDFFTEWARTRPD-VVAVDIRLKPGADQNELTRHRYEVILHKQPSQPRTANWGSEVPDLSGLETALARHGGRLRLARPNARLVSEAVQCGVPTNVGGTPLDPH-----ELASWGGQRGYSVHCTWSEAVIIPVDSGHCRDGVYRPVGPRPR | |||||||||||||
5 | 4q7iA | 0.08 | 0.04 | 1.60 | 0.56 | CNFpred | -----------------------DLMEISLGEFHNLSDAKKRELKAVADDL--GLTVMCCIGLK---------EYDFAS-------------PDKSVRDAGTEYVKRLLDDCHLL-----------GAPVFAGLTFCAWPQHP-KRPYVDRAIESVRRVIKVAEDYGIIYALEVAKEAIAFADAVD-------------------------------------------------------------- | |||||||||||||
6 | 2pffA1 | 0.11 | 0.09 | 3.33 | 0.55 | HHsearch-2 | VLQGLLQGG-----AKVVVAKYAKGSTLIVVPFNQGSQDVEALIEFIYTEKNGDAIIPFAAIPEQGIEHIDSKSEFAHRIM---------------LTNILRMMGCVKKQKSARGI----------ETRPAQVILPMSPNHGTFGDGMYSESKLSLETLFNRWHS-----ESW-----AN-QLTVCGAIIGWTRG--TGLMSANNIIAEGIEKMGVRTFSQKELLGLLTPEKSPVMADLNGGLQFVPE | |||||||||||||
7 | 4hqlA | 0.08 | 0.07 | 2.83 | 0.59 | Neff-PPAS | ---------------SEEVCNEQVDLYLLVDGYPNWITKVIPMLNGLINSLRDTINLYMNLFGSTELIRLGSGQSIDKRQALSKVTELRKTYTPYGTTSMTAALDEVQKHLNDRVNREK----------AIQLVILMTDGVPNSKYRALEVANKLKQR------NVRLAVIGIGQGINHQFNRLIAGCRPREPNCKFYADWNEAVALIKPFIAKVCTEVERVANCGPWDPWTACGRGTHSRSRPSLHE | |||||||||||||
8 | 1qaqA2 | 0.05 | 0.01 | 0.58 | 0.40 | HHsearch | -------------------------------------------------------------------------------------------RISHKD-------KQKYNYFVMKW----VNKE----Y-----------KK-IF----------TKNQFNNSLKHAGIDLNNISFEQFLSLFNSYKLFNK---------------------------------------------------------- | |||||||||||||
9 | 5khnB | 0.12 | 0.10 | 3.45 | 0.55 | SP3 | ESMST--LLALKDSP-----EAAVNDVTLLAP----SLADADAAAKRLDALPEGRTTTLSTFIPADQPEKRAAIATAA---STLLPALTQPPAPPATDAQRVAALKRASDLLGYAAED----------------------HPGPGAAAAQHLSQSLAKLAAADSATRDRAERAFADTLRIALNQLAALLQPQEITRDTLP----PPLVRDWVAPDGKALVQISPKVPKGVDPNDDTMLRHFAVKAEPG | |||||||||||||
10 | 1gca | 0.06 | 0.05 | 2.31 | 0.71 | PROSPECTOR2 | AMSVVRKIEKDGKSAPDVQ--------LLMNDSQNDQSKQNDQIDVLLAKGVK-----ALAINLVDPAAAGTVIEKARGQNKEPSRKALDSYDKTDSKESGVIQGDLIAKHWQANQGWDLNKDGK------IQYVLLKGEPGH------PDAEARTTYVVKELNDKGIQTEQWDTAQAKDKMDAWLSGPNANKHNKSSIPVDALPEALALVKSGAMAGTVLEGKGAADGTSWKIENKIVRVPYVFTQK | |||||||||||||
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References: | |
1. | Wei Zheng, Yang Li, Chengxin Zhang, Robin Pearce, S. M. Mortuza, Yang Zhang. "Deep-learning contact-map guided protein structure prediction in CASP13." Proteins: Structure, Function, and Bioinformatics, 87: 1149-1164 (2019). |