Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120 140 160 180 200 220 240
| | | | | | | | | | | | |
| Seq | MQQHEIHQFLERYFRANECDILEADDGYIKVQLSIEMDKELMNRPFYWHYIERTGGTPAPMQLTLITKQTEKTNSLEGERLHFGSPRLHQIFRSAQKRGGFIRLYEEVDTYQQSHIPLHPWLGLNVKISYQCDRTKDQILSLGLHLISGTIIEQFHDRLQKLKLTPKIPDYCFTISPLIKPKSGIGRLEQYIRRHIFQDDHTWAEKAKERWAEDLALLDHFYEGMEEKPECYYIEKEALEEQYKPRIIVSVINGGLFYL |
1 | 6bogA | 0.08 | 0.08 | 3.00 | 1.19 | CNFpred | | DDDTNLIAFAMNLFDIIGINQDDRGDNMIVLTPSDHMLVPD--------------PGLSEDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDSSTISLLKNKALPV----GTLLVELIYVVEAQA-FLPPTPVRMLLDK-NGNNLAVEFETFNR-QLNAVNRHTGSKLVNQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVN-DELTAIESNRQQVMESLQAGWRLDALRLIVVTH |
2 | 3dmqA | 0.10 | 0.09 | 3.40 | 1.66 | HHsearch-2 | | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---VP--DF--------PGLS-EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSSLLKNK----ALPVGTLLVELIYVVEAQAPKQLNRFLPL-LDKNGNNLAAQVEFETFNRQLNAV-NRHTGKLAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNDLTAIESNRQQVE--SLDQAGWRLDALRL--- |
3 | 3dmqA | 0.10 | 0.09 | 3.40 | 2.50 | HHsearch | | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---VPD--F--------PGLS-EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDTGSSSLLKNK----ALPVGTLLVELIYVVEAQAPKQLNRFLPL-LDKNGNNLAAQVEFETFNRQLNAV-NRHTSKLNVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNDETAIESNRQQVESLDQAGWR--LDALRL--- |
4 | 5cqcA1 | 0.09 | 0.07 | 2.66 | 0.80 | SPARKS-K | | MNSSRLHKLYSLFFDKLGDDVSVLLTGAYGFQSK--------KNDQQIFLFRPDSD------YVAGYHVDA---KSDAGWVN---DKLDRRLSEISEFCSILPFVEMPTDITKGVQH-------QVLLTISYDPKSKQLTPTVYDSIGRTCDEILTQSIEKADFTLGKFTRAAYNTEGNCGSYTFRTIKEVISSSAQGLTSQHVQDIESCIKYRVVDIESALTEGKTLP------------------------------ |
5 | 3dmqA4 | 0.08 | 0.07 | 2.56 | 0.82 | FFAS-3D | | ---------------------------------PQD---------------RLFAGQIDRDRFALRYRARKYSSEQFRQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTL--LVELIYVVEAQAPKQLQLNRFLLLDKNGNNLAAQVEFETFNRQLNAVNRHTGSKLVNAVQVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNDDELTAIESNRQQVESLDQAGWRLDALR------ |
6 | 3dmqA | 0.10 | 0.09 | 3.39 | 0.87 | HHpred | | DDDTNLIAFA-NLFDIIGINQDDRGDN-IVLTPSDHL---V--PDFP-------GLS--EDGITITFDREVALAREDAQFITWEHPLIRNGLDLILSGDSSTSLLKN-KA---LP-VGTLLVELIYVVEAQAPKQLNRFLPL-LDK-NGNNLAAVEFETFNRQLNAVNRHTKLVNAVQQDVHAILQLGEAQIEKSARALIDAARNEADEKLSAELSRLEALRAVNPNRDTAIESNRQQVESLDQAGWRLDALRL----- |
7 | 5cwmA | 0.11 | 0.09 | 3.24 | 0.64 | MUSTER | | -DPEDELKRVEKLVKEA-LRQAKEKGSEEDLEKALRTAEEAARE--AKKVLEQAEKEGDP--------------EVALRAVELVVRVAELLLRIAKESG-------SEEALERALRVAEEAARLAKRVLELAEKQGDEVALRAV-----ELVVRVAELLLRIAKESGSEELERALRVAEEAARLAKRVLELAEKQGDPEVARRAVELVKRVAELLERIARESEEAKERAERVREEARELQERVK-ELRER--------- |
8 | 1bw0A | 0.09 | 0.07 | 2.50 | 0.71 | CNFpred | | ---------YETVCKAYGIGMHFYNCRDWEADL-DEIRRLKD----------------DKTKLLIVTNPS-------PCGSNFSRKHVEDIVRLAEELRLPLFSDEI-TFTSVADFETTVPRVILGGTAMNLVVPGWRLGWLLYVDP-HGNGPSFLEGLKRVG----------------LVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGEC-------------------IGLAPTMPRGAMYLM |
9 | 3dmqA4 | 0.09 | 0.07 | 2.65 | 0.97 | HHsearch-2 | | ---------------------------------------------FSKPQDRLFAGQIDR-DRFALRYRARKYSSEQRQFITWEHPLIRNGLDLILSGDTGSISLLKNK----ALPVGTLLVELIYVVEAQAPKQPPTPVRL-LDKNGNNLAAQVFETFNR-QLNA-VNRH-TGSKLVNAVQQDVHAILQLGEAQIEKSARALRNEADEKLSAELSRLEALRAVNPDDETAIESNRQQV--ESLDQAGWRLDALRL--- |
10 | 2qa1A3 | 0.09 | 0.08 | 3.19 | 0.60 | Neff-PPAS | | -----------------EVVVLERLVGESRGLGFTARTMEVFDQRGILPRFGEVETSTQGHFGGLPIDFGVLEGAWQAAKTVPQSVTETHLEQWATGLGADIRRGHEVLSLTDDGA--------GVTVEVRGPEGKHTLRAAYLVGCDG--GRSSVRKAAGFDFPGTAATNATRQVTEYRSIQDAVNLGWKLGAVVNGTADSYHSERHAVGKRLLMNTQAQGLLFLSGPEVQPLRDVLTELIQYGEVARHLAGMVSGLE |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|