Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100 120
| | | | | | |
| Seq | MKKILNTSFFYAILAMVAGVFYREFTKFNDFTGKTTLAVMHVHLFVLGVVLLLIMLLLEKQFNLTNNKKFNQFYIVYNIGLMSTVTMFLIRGITQVRNIEITKAMSSAISGIAGISHITLGTGIIMFFLILKK |
1 | 4xydA3 | 0.13 | 0.13 | 4.44 | 1.97 | SPARKS-K | | ALLWSLGCATLAFFGAVWGFLHTLHGINYYTH-GTQITAAHGHLAFFGAYVSLNLAIFSYAFPILRQVLNMASFWLMAGGMTFMTFVLTFAGTVQTHAQRFMDVQDAIFYWMRFGSGIAVVLGALLFIYAVAV |
2 | 4xydA | 0.16 | 0.16 | 5.23 | 1.46 | FFAS-3D | | ---SLGCATLAFFGAGVWGFLH-TLHGINYYTHGTQITAAHGHLAFFGAYVSLNLAIFSYAFPPYNQVLNMASFWLMAGGMTFMTFVLTFAGTVQTDYFMDVQDAITIFYWMRFGSGIAVVLGALLFIYAVAV |
3 | 4xydA3 | 0.15 | 0.15 | 5.04 | 1.48 | HHpred | | ALLWSLGCATLAFFGGVWGFLLHGINY---YTHGTQITAAHGHLAFFGAYVSLNLAIFSYAFDPYNQVLNMASFWLMAGGMTFMTFVLTFAGTVQTHARVQDYFMDTIFYWMRFGSGIAVVLGALLFIYAVAV |
4 | 1xmeA2 | 0.14 | 0.14 | 4.85 | 1.52 | MUSTER | | AFVAPVLGLLGFIPGGAGGIVNAS-FTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLQRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFS |
5 | 3mk7A | 0.16 | 0.15 | 5.03 | 1.05 | CNFpred | | ILRFLVVSLAFYGMSTFEGPMMKTVNALSH---YTDWTIGHVHAGALGWVAMVSIGALYHLVPK-SIGLINTHFWLATIGTVLYIASMWVNGIAQGLMWSFVESLSHPGFVVRMIGGAIFFAGMLVMAYNTWR |
6 | 1fftA2 | 0.11 | 0.11 | 3.83 | 1.37 | HHsearch-2 | | AMLWTIGFIVTFSVGGMTGVL-LAVPGADFVLHNSLFLIAHFHNVIIGGVVFGCFAGMTYWWKAFNETWGKRAFWFWIIGFFVAFMPLYALGF-MGMTRRLSQQIFHTMLMIAASGAVLIALGILCLVIQMYV |
7 | 1xmeA2 | 0.14 | 0.14 | 4.85 | 1.39 | Neff-PPAS | | AFVAPVLGLLGFIPGGAGGIVNAS-FTLDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPNLTRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRVPDAYPHAAVPMVFNVLAGIVLLVALLLFIYGLFS |
8 | 4xydA3 | 0.15 | 0.15 | 5.05 | 2.02 | HHsearch | | ALLWSLGCATLAFFGGVWGFLH-TLHGINYYTHGTQITAAHGHLAFFGAYVSLNLAIFSYAFPPYNQVLNMASFWLMAGGMTFMTFVLTFAGTVQTHAQRVQYFQDTIFYWMRFGSGIAVVLGALLFIYAVA- |
9 | 4xydA1 | 0.11 | 0.11 | 3.82 | 1.00 | PROSPECTOR2 | | MLVYFAVALGLFAIQVSGGLLLGWIYVSPNFLSEILPIVRMLHTNSLVWLLLGFMGAAYFVIEIHSPLLAYLQLAIMVLGTLGVVVTYLFNL---FEGNWLLGKEGREFLEQPVWVKMGIVVAALIFMYNISK |
10 | 1xmeA2 | 0.16 | 0.16 | 5.25 | 1.00 | SAM | | -FVAPVLGLLGFIPGGAGGIVNASFT-LDYVVHNTAWVPGHFHLQVASLVTLTAMGSLYWLLPISDRRLGLAVVWLWFLGMMIMAVGLHWAGLLNVPRRAYIAVPDAVPMVFNVLAGIVLLVALLLFIYGLFS |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
|