Rank | PDB hit | ID1 | ID2 | Cov | Norm. Zscore | Threadingprogram | | 20 40 60 80 100
| | | | | |
| Seq | TYRTVCVRTCDGYYFPISFATVPSRFGDDERTCKSLCPASEASLYAYRNPGQDMNQAVSINGQPYSSLPNAFRYRQEFNPSCTCKPANQTWADAMKGVDDRSAAEHGDIIVTEE |
1 | 3q2oA1 | 0.07 | 0.06 | 2.54 | 0.74 | SPARKS-K | | ------MTRIILPGKTIGIIGGGQLGRMMALAAKEM--GYKIAVLDPTKNSPCAQVADIEIVASYDD----LKAIQHLAEISDYEFENIDY-RCLQWLEKHAYLPQGSQLLSKT |
2 | 3gyxB | 0.17 | 0.15 | 4.90 | 0.37 | FFAS-3D | | GEKTACMYICPNDLMILDPEEMKAFNQEPEASCIKICPQGAITAIPLRGSEDIMWTIKFRNGS-----VKRFKFPIRTTPEGSIKPFEGK---------PEAGDLENELLFTET |
3 | 5haaA2 | 0.13 | 0.11 | 3.96 | 0.30 | HHpred | | -------LGTAVGMIVTTFASHIARVNSIVQFAQEM--G--RIPVLL---GRSMERYVGTYQLGYIDLPENEEAGKKYPVMTGHQGEPGAVLGRIANGETPFKVETGDRIIFSA |
4 | 5yz0A | 0.12 | 0.11 | 4.04 | 0.69 | MUSTER | | VIRASCVSG-----FFILLQQQNSCNRVPKILIDKVKDDSDIVKKEFASILGQLVCTLHGMFYLTSSLTEPFSEHGHVDLFCRNLKATSQHECSSSQLKAKPFLFLLKKKIPSP |
5 | 3o65A | 0.11 | 0.04 | 1.60 | 0.71 | CNFpred | | --HWFTIRKFGKHWFNLNSLLAGPELISDTCLANFLAQQQAYSVFVVKG----------------------------------------------------------------- |
6 | 1b9tA | 0.10 | 0.04 | 1.31 | 0.35 | HHsearch-2 | | -------------------------------------------------------------------------EPEWTYPRLSCQGSTFQKALLISPHRFGEIKGNSAPLIIRE |
7 | 2k13X | 0.11 | 0.10 | 3.49 | 0.72 | Neff-PPAS | | EEREDCWTFYANR--KYTDFDKSFKKSSDLDECKKTCFKTEYCYIVFEDTVNKECYYNVVDGEDQEKFVVDENFTENYLTDCEGKDAGNAAGTGDESDEVDED----------- |
8 | 3lzkA | 0.13 | 0.11 | 3.63 | 0.53 | HHsearch | | RAFQAAVIVIRLV--LVNDVSL-RGLIPGELQSKPSSAFSPV--AV---TPEELGEAVDLNGEP--------------FGRANAGD-TFDFPQLIVHAARTRPLSAGTIIGSG- |
9 | 2l9yA2 | 0.08 | 0.04 | 1.41 | 0.64 | SP3 | | ------------------------------------------------GGGGGTATVTVQQGDTLRD--IGRRF-----------DCDFHEIARRNNIQNEDLIYPGQVLQVPT |
10 | 2gdtA | 0.06 | 0.05 | 2.28 | 0.47 | PROSPECTOR2 | | GHVQLSLPVLQRDVLVRGFGDSVEEALSEAREHLKN---GTCGLV-------------ELEKGVLPQLEQPYVFIKRSDALSTNHGHKVVELVAEMDGIQYGRSGITLGVLKNG |
(a) | ID1 is the number of template residues identical to query divided by number of aligned residues. |
(b) | ID2 is the number of template residues identical to query divided by query sequence length. |
(c) | Cov is equal the number of aligned template residues divided by query sequence length. |
(d) | Norm. Zscore is the normalized Z-score of the threading alignments. A Normalized Z-score >1 means a good alignment and is highlighted in bold. |
(e) | Threading program lists the threading program used to identify the template. |
(f) | Template residues identical to query sequence are highlighted in color. |
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